hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12003/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4029  ( 406 res)   mpm12003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEP      Domain found in Dishevelled, Egl-10, and Ple   103.1    3.3e-26   1
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      68.6      8e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      41   120 ..     1    80 []    68.6    8e-16
DEP        1/1     206   280 ..     1    90 []   103.1  3.3e-26

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 41 to 120: score 68.6, E = 8e-16
                   *->gglGfsivg........gifvssvvpGspAakaGrkslglLkvGDvI
                        lG+sivg++++++++gi++ s+++G++ a +Gr     + +GD++
   mKIAA4029    41    HFLGISIVGqsndrgdgGIYIGSIMKGGAVAADGR-----IEPGDML 82   

                   leVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   l+VN+ ++ e+++ ++av++l++   +    +++Ltv +     
   mKIAA4029    83 LQVND-VNFENMSNDDAVRVLREIVSQT--GPISLTVAKCW    120  

DEP: domain 1 of 1, from 206 to 280: score 103.1, E = 3.3e-26
                   *->pesglklddrkyflktypncFtGselVdWLldnlegqsnngptkttf
                      p+sgl+++dr+++++t+ n+++G+++VdWL+ ++eg           
   mKIAA4029   206    PDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEG----------- 241  

                   iidreeAvhlgqaLlkeGlihhvndpnkhtFkdsknalYrFtd<-*
                    ++r+eA+++++++lk+G+++h +  nk tF++  +++Y+F+d   
   mKIAA4029   242 FKERREARKYASSMLKHGFLRHTV--NKITFSE--QCYYVFGD    280  

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