hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm12003/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4029 ( 406 res) mpm12003 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DEP Domain found in Dishevelled, Egl-10, and Ple 116.0 7.2e-31 1 PDZ PDZ domain (Also known as DHR or GLGF) 94.0 3e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PDZ 1/1 31 117 .. 1 82 [] 94.0 3e-24 DEP 1/1 206 278 .. 1 80 [] 116.0 7.2e-31 Alignments of top-scoring domains: PDZ: domain 1 of 1, from 31 to 117: score 94.0, E = 3e-24 *->evtlekevkrgglGfsikggsdk....givvsevlpGsgaAeagGrL ++t ++ +++lG+si+g+s++++++gi++ ++++G ga +a+Gr+ mKIAA4029 31 LLTAPPAERHHFLGISIVGQSNDrgdgGIYIGSIMKG-GAVAADGRI 76 keGDqIlsvNGqdvenlsheravlalkgsgg..sevtLtil<-* ++GD++l+vN++++en+s ++av +l+++++++++++Lt++ mKIAA4029 77 EPGDMLLQVNDVNFENMSNDDAVRVLREIVSqtGPISLTVA 117 DEP: domain 1 of 1, from 206 to 278: score 116.0, E = 7.2e-31 *->pesgvklkdrkwlkkvipncFtGselVdWLmdnlsgiidrkeAlhla p+sg+ ++dr+wlk++i n+ +G+++VdWL +++g ++r+eA+++a mKIAA4029 206 PDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERREARKYA 252 qlLlkeGyirhvgdhltgkndhtFldkqtyYrf<-* +++lk+G++rh +n+ tF++ q+yY+f mKIAA4029 253 SSMLKHGFLRHT------VNKITFSE-QCYYVF 278 //