hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid25067/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4028  ( 351 res)   mid25067

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH2      Src homology 2 domains                         108.5    7.5e-28   1
PH       Pleckstrin homology domain.                     54.4    1.4e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1      45   159 ..     1    82 []    54.4  1.4e-11
SH2        1/1     248   337 ..     1    87 []   108.5  7.5e-28

Alignments of top-scoring domains:
PH: domain 1 of 1, from 45 to 159: score 54.4, E = 1.4e-11
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk......kp
                      ++++G+L  ++++++++++ wk+ +++L+++ L+y  + ++++++ +
   mKIAA4028    45    PEIQGFLQLRGsgrgsgRkLWKRFFCFLRRSGLYYSTKGtskdprHL 91   

                   kgsipLsgcsvre.p............cFeivt.dr......tlllqAes
                   + + ++++  v++ + +++  + + + +F+++ ++ ++++++ ++++ e+
   mKIAA4028    92 QYVADVNESNVYVvTqgrklygmptdfGFCVKPnKLrnghkgLHIFCSED 141  

                   eeereeWvealqsaiaka<-*
                   e++r++W++a++   +     
   mKIAA4028   142 EQSRTCWLAAFRLFKYGV    159  

SH2: domain 1 of 1, from 248 to 337: score 108.5, E = 7.5e-28
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg
                      +pW+HG+isRee ++l  ++g  dG FLvR+S+++p+++vLS+++ +
   mKIAA4028   248    QPWFHGRISREESQRLIGQQGLVDGVFLVRESQRNPQGFVLSLCHLQ 294  

                   kvkHyrIrrtdd...gkfylggtprrkFpsL.eLvehYqknslg<-*
                   kvkHy+I +++d++   f+ ++ + ++F +L +Lve++q n++    
   mKIAA4028   295 KVKHYLILPSEDegcLYFSMDE-GQTRFTDLlQLVEFHQLNRGI    337  

//