hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid25067/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4028  ( 351 res)   mid25067

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH2      SH2 domain                                      84.3    2.6e-21   1
PH       PH domain                                       62.0    1.3e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1      45   157 ..     1    92 []    62.0  1.3e-14
SH2        1/1     250   331 ..     1    82 []    84.3  2.6e-21

Alignments of top-scoring domains:
PH: domain 1 of 1, from 45 to 157: score 62.0, E = 1.3e-14
                   *->vikeGwLlkkg.....gkkswkkRyfvLfndvLlyykdkk....kkp
                      ++++G+L+++g+++++g+k wk+ +++L+++ L+y  + +++++  +
   mKIAA4028    45    PEIQGFLQLRGsgrgsGRKLWKRFFCFLRRSGLYYSTKGTskdpRHL 91   

                   kgsipLsgiqvekvpdn......krkncFeirt.dr.....etlllqaes
                   +++ ++++++v+ v+ +++  + +++++F+++ +  +++++  ++++ e+
   mKIAA4028    92 QYVADVNESNVYVVTQGrklygmPTDFGFCVKPnKLrnghkGLHIFCSED 141  

                   eeerkeWvkaiqsair<-*
                   e++r+ W++a++   +   
   mKIAA4028   142 EQSRTCWLAAFRLFKY    157  

SH2: domain 1 of 1, from 250 to 331: score 84.3, E = 2.6e-21
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                      W+hG IsR+e +rl  + g  dG FLvReS+++p +++LS+++    
   mKIAA4028   250    WFHGRISREESQRLIGQQGLVDGVFLVRESQRNPQGFVLSLCHLQ-- 294  

                   gdrVkHyrIqsldng...gyyitggvk.FssLpeLvehY<-*
                     +VkHy I   ++++   + + +g+++F +L +Lve++   
   mKIAA4028   295 --KVKHYLILPSEDEgclYFSMDEGQTrFTDLLQLVEFH    331  

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