hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh07169/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4023  ( 888 res)   msh07169

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LNS2     LNS2 (Lipin/Ned1/Smp2)                         366.9   2.1e-106   1
Lipin_N  lipin, N-terminal conserved region             279.9    3.3e-80   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Lipin_N    1/1      41   154 ..     1   115 []   279.9  3.3e-80
LNS2       1/1     677   833 ..     1   159 []   366.9 2.1e-106

Alignments of top-scoring domains:
Lipin_N: domain 1 of 1, from 41 to 154: score 279.9, E = 3.3e-80
                   *->MnyVGrlagrvfksVkelynsiNPATLSGAIDVIVVeQpDGslrCSP
                      MnyVG+la++vf++Vkely+++NPATLSG+IDV+VV+Q+DGs+rCSP
   mKIAA4023    41    MNYVGQLAETVFGTVKELYRGLNPATLSGGIDVLVVRQRDGSFRCSP 87   

                   FhVRFGKlQgVLksseKvVdIeVNGkevDlhMkLgdsGEAFFVeEtedde
                   FhVRFGKl gVL+s+eKvVdIe+NG++vDlhMkLgdsGEAFFV+E+++de
   mKIAA4023    88 FHVRFGKL-GVLRSREKVVDIEINGEPVDLHMKLGDSGEAFFVQELDSDE 136  

                   edvPdyLltSPipnktta<-*
                   edvP++L+tSPip+++++   
   mKIAA4023   137 EDVPPRLCTSPIPWGGLS    154  

LNS2: domain 1 of 1, from 677 to 833: score 366.9, E = 2.1e-106
                   *->vViSDIDGTITkSDvLGHvlpiiGkDPWthaGVadLyrkiqenGYkI
                      vViSDIDGTITkSD+LGH+lp +GkD Wth+G+++Ly+ki+ nGYk+
   mKIAA4023   677    VVISDIDGTITKSDALGHILPQLGKD-WTHQGITSLYHKIHLNGYKF 722  

                   iYLTaRaiGQadrTrsYLsqvkQdGknLPdGpViLSPdrlfaALkREvIe
                   +Y++aRaiG+ad+T++YL++v+++G+ LP+Gp++LSP++lf+AL+REvIe
   mKIAA4023   723 LYCSARAIGMADLTKGYLQWVSEHGCGLPKGPILLSPSSLFSALHREVIE 772  

                   kkPeeFKiacLrdIrnlFppdngnpFyAGFGNritDvisYraVgvppsrI
                   kkPe+FK+acL dI++lF p +++pF+A+FGNr++Dv++Yr+Vg+p+srI
   mKIAA4023   773 KKPEVFKVACLSDIQQLFLP-QRQPFHAAFGNRPNDVFAYRQVGLPESRI 821  

                   FtInpkgevhqe<-*
                   Ft+np+ge+ qe   
   mKIAA4023   822 FTVNPRGELIQE    833  

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