hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid01018/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4022  ( 798 res)   mid01018

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VWA      von Willebrand factor (vWF) type A domain       56.1    4.4e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VWA        1/1     284   465 ..     1   193 []    56.1  4.4e-12

Alignments of top-scoring domains:
VWA: domain 1 of 1, from 284 to 465: score 56.1, E = 4.4e-12
                   *->plDvvfllDgSgSmg.........gnrfekvkefv.klveqld.gdr
                         +vfl+D SgSm ++ +++++++ r+e++ke +  l+++l+ g +
   mKIAA4022   284    CGEFVFLMDRSGSMDspmstennsQLRIEAAKETLlLLLKSLPmGCY 330  

                   vglvqFssdvrvefpln....sqskdallealaslsykglkdyslgggTn
                   + +++F+s+ +  fp   + +  + +++++++++l+          ggT 
   mKIAA4022   331 FNIYGFGSSYEKFFPESvkytQDTMEDAVKRVKALKA-------NLGGTE 373  

                   lg.ALqyalenlfsesag.rrgagratkiSnvpkvliliTDGesndggdd
                   + + L  +++      +              +p  l ++TDGe +     
   mKIAA4022   374 ILtPLCNIYKA-----SSiPG----------HPLQLFVFTDGEVS----- 403  

                   pedileaakelkrsg..vkvfvigvgna.de.elkeiasep.gehvffdv
                     d+  +++e+k + ++++ f++g+g+   ++ +k ia+ ++g+ vf+  
   mKIAA4022   404 --DTFSVIREVKLNSkkHRCFSFGIGQGaSTsLIKNIARVSgGTAVFI-- 449  

                   sdvedlpslldllidlll<-*
                     +  ++ ++++l +l +   
   mKIAA4022   450 --TGKDRMQTKALGSLKF    465  

//