hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid01018/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4022  ( 798 res)   mid01018

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VWA      von Willebrand factor type A domain             20.5    0.00034   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VWA        1/1     286   459 ..     1   195 []    20.5  0.00034

Alignments of top-scoring domains:
VWA: domain 1 of 1, from 286 to 459: score 20.5, E = 0.00034
                   *->DivFllDgSgSige.........enlFekvkdFvkklveknldigpd
                        vFl+D SgS++++ +++++++ +  e +k+ +  l++     +p 
   mKIAA4022   286    EFVFLMDRSGSMDSpmstennsqLR-IEAAKETLLLLLK----SLPM 327  

                   gtrVglvqYssdvrtefsLndysskddllaav..lknlrylgGgTnNtgk
                   g  +++  ++s     f+    ++ d +++av+++k l+   GgT  + +
   mKIAA4022   328 GCYFNIYGFGSSYEKFFPESVKYTQDTMEDAVkrVKALKANLGGTE-ILT 376  

                   ALkyalenlfsstMikrnrsagsRpenapkvlillTDGksndggdve.aa
                    L  +++               s p + p  l+++TDG+ +d  +v +++
   mKIAA4022   377 PLCNIYKA-------------SSIP-GHPLQLFVFTDGEVSDTFSVIrEV 412  

                   aalrdkkkgvgitvfavGvGgdvdeaeLr.iasepeseghvfyvedfdal
                   +   +k    + + f++G+  +++ + +++ia    s+g++ +++ +d  
   mKIAA4022   413 KLNSKK---HRCFSFGIGQ--GASTSLIKnIA--RVSGGTAVFITGKD-- 453  

                   wlelqdiqeql<-*
                        ++q +    
   mKIAA4022   454 -----RMQTKA    459  

//