hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj24359/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4020  ( 391 res)   mfj24359

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GTP_CDC  Cell division protein                          601.3   5.6e-177   1
MMR_HSR1 GTPase of unknown function                      10.1    0.00079   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MMR_HSR1   1/1      41   187 ..     1   140 []    10.1  0.00079
GTP_CDC    1/1      37   313 ..     1   294 []   601.3 5.6e-177

Alignments of top-scoring domains:
MMR_HSR1: domain 1 of 1, from 41 to 187: score 10.1, E = 0.00079
                   *->lrvaivGrPNVGKSTLiNaLtgk...............kraiVsdyP
                      ++ ++vG +  GKSTLiN+L   +  +++ ++++++ +k ++V+   
   mKIAA4020    41    FTLMVVGESGLGKSTLINSLFLTdlyspeypgpshrikKTVQVEQSK 87   

                   GtTrdpnegrveldgrqiilvDTPGiiegaskgeg...............
                      + ++eg v+     +++vDTPG++++ + +   ++  +  +++ ++ 
   mKIAA4020    88 ---VLIKEGGVQ---LLLTIVDTPGFGDAVDNSNCwqpvidyidskfedy 131  

                   ....elgertleaieeaDlilfVvDase.gltedytieeDleiadllyde
                    + + +++r      +++++l+ +  s +gl+     + D e+ ++l   
   mKIAA4020   132 lnaeSRVNRRQMPDNRVQCCLYFIAPSGhGLK-----PLDIEFMKRL--- 173  

                   erernleltLqelekkgkPvilvlNKiD<-*
                                ek +  +i ++ K+D   
   mKIAA4020   174 ------------HEKVN--IIPLIAKAD    187  

GTP_CDC: domain 1 of 1, from 37 to 313: score 601.3, E = 5.6e-177
                   *->kGfdFTLMVVGeSGLGKtTlINTLFltdLidangvanDsreidgpae
                      +Gf+FTLMVVGeSGLGK+TlIN+LFltdL++         e++gp+ 
   mKIAA4020    37    RGFEFTLMVVGESGLGKSTLINSLFLTDLYSP--------EYPGPSH 75   

                   tkikkTveIkeitkveiEEdGvkLnLTViDTPGFGDaiDNskcWepIveY
                    +ikkTv+++  +kv+i+E Gv L LT++DTPGFGDa+DNs+cW+p+++Y
   mKIAA4020    76 -RIKKTVQVE-QSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY 123  

                   IdeQheqYLrqEsrinRetkivDnRVHcCLYFIsPtGhgLkpLDvefMKk
                   Id+++e YL +Esr+nR + + DnRV cCLYFI P+GhgLkpLD+efMK+
   mKIAA4020   124 IDSKFEDYLNAESRVNR-RQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 172  

                   LsekVNlIPVIAKADtLTadElqefKkrIreeierqnIkIYkFPPdeeed
                   L+ekVN+IP IAKADtLT++E q+fKk+I+ ei +++IkIY F P++++ 
   mKIAA4020   173 LHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEF-PETDD- 220  

                   eGDEefkeqtqqLkssiPFAIVGSneeiengdGekVRGRkYPWGvVEVEN
                   e  Ee  ++ +++k+++P A+VGSn++ie  +G++VRGR+YPWGv EVEN
   mKIAA4020   221 E--EE-NKLVKKIKDRLPLAVVGSNTIIEV-NGKRVRGRQYPWGVAEVEN 266  

                   psHCDFvkLRnlLirtHLqDLketTeeilYEnYRsekLsalglkaen<-*
                    +HCDF +LRn+LirtH+qDLk++T++++YEnYRs+kL+a   ++ +   
   mKIAA4020   267 GEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVD    313  

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