hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid02022/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4019  ( 686 res)   mid02022

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                 39.3    5.2e-07   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/3      48    77 ..     1    30 []     7.6  4.5e+02
ANK        2/3      82   111 ..     1    30 []    16.3      4.2
ANK        3/3     115   144 ..     1    30 []    15.4      8.3

Alignments of top-scoring domains:
ANK: domain 1 of 3, from 48 to 77: score 7.6, E = 4.5e+02
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      d    LH  +++gnle++  Ll+ ga  n    
   mKIAA4019    48    DLSKQLHSSVRTGNLETCLRLLSLGAQANF    77   

ANK: domain 2 of 3, from 82 to 111: score 16.3, E = 4.2
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G TpLH+Aa+ g+   ++lL+ +gad+     
   mKIAA4019    82    KGTTPLHVAAKAGQTLQAELLVVYGADPGS    111  

ANK: domain 3 of 3, from 115 to 144: score 15.4, E = 8.3
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +GrTp+ +A + g++e+++ L++   ++++   
   mKIAA4019   115    NGRTPIDYARQAGHHELAERLVECQYELTD    144  

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