hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid02022/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4019  ( 686 res)   mid02022

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                  40.8      3e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/2      82   114 ..     1    33 []    28.1  0.00021
Ank        2/2     115   147 ..     1    33 []    12.8      2.9

Alignments of top-scoring domains:
Ank: domain 1 of 2, from 82 to 114: score 28.1, E = 0.00021
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TPLH+Aa+ g++  ++lL+ +GAd+   d    
   mKIAA4019    82    KGTTPLHVAAKAGQTLQAELLVVYGADPGSPDV    114  

Ank: domain 2 of 2, from 115 to 147: score 12.8, E = 2.9
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TP+ +A + g++e+++ L+++  +l  +     
   mKIAA4019   115    NGRTPIDYARQAGHHELAERLVECQYELTDRLA    147  

//