hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mej/mej02761/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4018 ( 606 res) mej02761 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_PS Leucine-rich repeat, plant-specific subfamil 134.3 1.3e-35 14 LRR_TYP Leucine-rich repeats, typical (most populate 106.4 3.3e-27 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_PS 1/14 117 139 .. 1 24 [] 2.6 5.4e+02 LRR_TYP 1/12 118 139 .. 1 24 [] 8.6 37 LRR_PS 2/14 140 162 .. 1 24 [] 13.1 24 LRR_TYP 2/12 140 162 .. 1 24 [] 18.8 0.79 LRR_PS 3/14 163 185 .. 1 24 [] 12.0 33 LRR_TYP 3/12 163 186 .. 1 24 [] 4.1 1.3e+02 LRR_PS 4/14 186 208 .. 1 24 [] 11.6 38 LRR_PS 5/14 209 231 .. 1 24 [] 2.6 5.5e+02 LRR_TYP 4/12 209 231 .. 1 24 [] 1.8 2.5e+02 LRR_PS 6/14 232 254 .. 1 24 [] 3.3 4.5e+02 LRR_TYP 5/12 232 254 .. 1 24 [] 8.7 36 LRR_PS 7/14 255 277 .. 1 24 [] 17.8 1.5 LRR_TYP 6/12 255 277 .. 1 24 [] 17.1 2.5 LRR_TYP 7/12 278 300 .. 1 24 [] 16.6 3.5 LRR_PS 8/14 278 300 .. 1 24 [] 18.1 1.3 LRR_TYP 8/12 301 323 .. 1 24 [] 16.4 4.2 LRR_PS 9/14 301 323 .. 1 24 [] 11.5 38 LRR_TYP 9/12 324 346 .. 1 24 [] 14.2 7.7 LRR_PS 10/14 324 346 .. 1 24 [] 22.9 0.045 LRR_PS 11/14 347 369 .. 1 24 [] 19.5 0.49 LRR_TYP 10/12 347 370 .. 1 24 [] 22.6 0.056 LRR_PS 12/14 370 392 .. 1 24 [] 16.0 5.4 LRR_PS 13/14 393 415 .. 1 24 [] 15.8 6 LRR_TYP 11/12 393 416 .. 1 24 [] 13.1 11 LRR_PS 14/14 416 438 .. 1 24 [] 0.6 1e+03 LRR_TYP 12/12 440 462 .. 1 24 [] 3.1 1.8e+02 Alignments of top-scoring domains: LRR_PS: domain 1 of 14, from 117 to 139: score 2.6, E = 5.4e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* +sL++L L N+L e+P+++++ mKIAA4018 117 ARSLEELLLDANQLR-ELPEQFFQ 139 LRR_TYP: domain 1 of 12, from 118 to 139: score 8.6, E = 37 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L+eL L+ NqL++LP++ F mKIAA4018 118 -RSLEELLLDANQLRELPEQ-FFQ 139 LRR_PS: domain 2 of 14, from 140 to 162: score 13.1, E = 24 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L+ L Ls+N + +P+++ n mKIAA4018 140 LVKLRKLGLSDNEIQ-RLPPEIAN 162 LRR_TYP: domain 2 of 12, from 140 to 162: score 18.8, E = 0.79 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++Lr+L Ls+N +++LPp++ ++ mKIAA4018 140 LVKLRKLGLSDNEIQRLPPEI-AN 162 LRR_PS: domain 3 of 14, from 163 to 185: score 12.0, E = 33 *->LtsLqvLdLsnNnLsGeIPsslgn<-* + +L++Ld+s N + eIP+s+ mKIAA4018 163 FMQLVELDVSRNDIP-EIPESIAF 185 LRR_TYP: domain 3 of 12, from 163 to 186: score 4.1, E = 1.3e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +L eLd s+N + ++P+ + + mKIAA4018 163 FMQLVELDVSRNDIPEIPESIAFC 186 LRR_PS: domain 4 of 14, from 186 to 208: score 11.6, E = 38 *->LtsLqvLdLsnNnLsGeIPsslgn<-* ++ Lqv d+s+N L+ +P+s+ mKIAA4018 186 CKALQVADFSGNPLT-RLPESFPE 208 LRR_PS: domain 5 of 14, from 209 to 231: score 2.6, E = 5.5e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L+ L +++ +L ++P+++gn mKIAA4018 209 LQNLTCLSVNDISLQ-SLPENIGN 231 LRR_TYP: domain 4 of 12, from 209 to 231: score 1.8, E = 2.5e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL+ L+ ++ L+sLP+++ ++ mKIAA4018 209 LQNLTCLSVNDISLQSLPENI-GN 231 LRR_PS: domain 6 of 14, from 232 to 254: score 3.3, E = 4.5e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L +L+L +N L+ +P+sl + mKIAA4018 232 LYNLASLELRENLLT-YLPDSLTQ 254 [output cut off at A = 10 top alignments] //