hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mej/mej02761/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4018 ( 606 res) mej02761 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_1 Leucine Rich Repeat 134.1 2.5e-36 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_1 1/15 119 141 .. 1 25 [] 11.9 16 LRR_1 2/15 142 164 .. 1 25 [] 14.1 3.4 LRR_1 3/15 165 187 .. 1 25 [] 12.7 9 LRR_1 4/15 188 210 .. 1 25 [] 12.8 8.2 LRR_1 5/15 211 233 .. 1 25 [] 4.8 3.2e+02 LRR_1 6/15 234 256 .. 1 25 [] 13.1 6.9 LRR_1 7/15 257 279 .. 1 25 [] 14.2 3.2 LRR_1 8/15 280 302 .. 1 25 [] 15.5 1.3 LRR_1 9/15 303 325 .. 1 25 [] 13.1 6.8 LRR_1 10/15 326 348 .. 1 25 [] 15.3 1.5 LRR_1 11/15 349 371 .. 1 25 [] 10.1 42 LRR_1 12/15 372 394 .. 1 25 [] 13.1 6.6 LRR_1 13/15 395 417 .. 1 25 [] 7.8 1e+02 LRR_1 14/15 418 440 .. 1 25 [] 3.4 5.5e+02 LRR_1 15/15 441 463 .. 1 25 [] 11.7 18 Alignments of top-scoring domains: LRR_1: domain 1 of 15, from 119 to 141: score 11.9, E = 16 *->nLeeLdLsgCNpslsgslppsl.glp<-* +LeeL L+ N +l ++lp+ + l mKIAA4018 119 SLEELLLDA-N-QL-RELPEQFfQLV 141 LRR_1: domain 2 of 15, from 142 to 164: score 14.1, E = 3.4 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L++L Ls+ N +++ lpp++ ++ mKIAA4018 142 KLRKLGLSD-N-EIQ-RLPPEIaNFM 164 LRR_1: domain 3 of 15, from 165 to 187: score 12.7, E = 9 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L eLd+s+ N + +++p+s+ ++ mKIAA4018 165 QLVELDVSR-N-DI-PEIPESIaFCK 187 LRR_1: domain 4 of 15, from 188 to 210: score 12.8, E = 8.2 *->nLeeLdLsgCNpslsgslppsl.glp<-* L++ d+sg N +l+ lp+s++ l+ mKIAA4018 188 ALQVADFSG-N-PLT-RLPESFpELQ 210 LRR_1: domain 5 of 15, from 211 to 233: score 4.8, E = 3.2e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL+ L++++ sl+ slp+++++l mKIAA4018 211 NLTCLSVND-I-SLQ-SLPENIgNLY 233 LRR_1: domain 6 of 15, from 234 to 256: score 13.1, E = 6.9 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL +L+L+ N l+ lp+sl l+ mKIAA4018 234 NLASLELRE-N-LLT-YLPDSLtQLR 256 LRR_1: domain 7 of 15, from 257 to 279: score 14.2, E = 3.2 *->nLeeLdLsgCNpslsgslppsl.glp<-* +LeeLdL++ N ++ lp+s++ l mKIAA4018 257 RLEELDLGN-N-EIY-NLPESIgALL 279 LRR_1: domain 8 of 15, from 280 to 302: score 15.5, E = 1.3 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L+ L L+g N +ls +lp ++++l+ mKIAA4018 280 HLKDLWLDG-N-QLS-ELPQEIgNLK 302 LRR_1: domain 9 of 15, from 303 to 325: score 13.1, E = 6.8 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL Ld+s N +l+ lp++++gl+ mKIAA4018 303 NLLCLDVSE-N-RLE-RLPEEIsGLT 325 LRR_1: domain 10 of 15, from 326 to 348: score 15.3, E = 1.5 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L++L +s N l+ ++p+++++l+ mKIAA4018 326 SLTYLVISQ-N-LLE-TIPEGIgKLK 348 LRR_1: domain 11 of 15, from 349 to 371: score 10.1, E = 42 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L +L L+ N +l+ lp+ ++++ mKIAA4018 349 KLSILKLDQ-N-RLT-QLPEAIgDCE 371 LRR_1: domain 12 of 15, from 372 to 394: score 13.1, E = 6.6 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL+eL L N +l +lp+s+++l+ mKIAA4018 372 NLTELVLTE-N-RLL-TLPKSIgKLK 394 LRR_1: domain 13 of 15, from 395 to 417: score 7.8, E = 1e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L +L+ ++ N +l slp++++g+ mKIAA4018 395 KLSNLNADR-N-KLV-SLPKEIgGCC 417 LRR_1: domain 14 of 15, from 418 to 440: score 3.4, E = 5.5e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L+ +++ N +l+ lp++ + mKIAA4018 418 SLTMFCIRD-N-RLT-RLPAEVsQAV 440 LRR_1: domain 15 of 15, from 441 to 463: score 11.7, E = 18 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L +Ld+ g N +l +lp sl l+ mKIAA4018 441 ELHVLDVAG-N-RLH-HLPLSLtTLK 463 //