hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj41118/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4015  ( 1109 res)   mfj41118

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           32.4    6.1e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/2     449   524 ..     1   121 []    19.3    0.037
RRM        2/2     646   725 ..     1   121 []    13.1     0.18

Alignments of top-scoring domains:
RRM: domain 1 of 2, from 449 to 524: score 19.3, E = 0.037
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       +  +++  p+++t+e++ ++F             +   G  v+   
   mKIAA4015   449    LIRLSGV--PENATKEEILNAF-------------RTSDGIPVKDLQ 480  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +++ +                     TG   G+  VeF+  edA  +  +
   mKIAA4015   481 LKEYN---------------------TGYDYGYVCVEFSLLEDAIGC--M 507  

                   ealnaskGkeledgGrptlglrVe<-*
                   ea++  +  ++  ++++   +++e   
   mKIAA4015   508 EANQ--GTLMI--HDKE---VTLE    524  

RRM: domain 2 of 2, from 646 to 725: score 13.1, E = 0.18
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t+  + +    ++  e + e+               +++ +++ + +
   mKIAA4015   646    TIMLKRI--YRSTPPEVIVEVL--------------EPYVHLTTANV 676  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +  k+                  ++g   +  ++F++ +++++A ++  +
   mKIAA4015   677 RIIKN------------------RTGPMGHT-YGFIDLDSHAEALRV--V 705  

                   ealna.skGkeledgGrptlglrVe<-*
                   + l++ +  + +  +G++   + V+   
   mKIAA4015   706 KILQNlDPPFSI--DGKM---VAVN    725  

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