hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mnj/mnj12200/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4013  ( 308 res)   mnj12200

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
RNase_PH   3' exoribonuclease family, domain 1          115.2    1.2e-30   1
RNase_PH_C 3' exoribonuclease family, domain 2           47.2    3.7e-10   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
RNase_PH     1/1      63   198 ..     1   154 []   115.2  1.2e-30
RNase_PH_C   1/1     223   290 ..     1    84 []    47.2  3.7e-10

Alignments of top-scoring domains:
RNase_PH: domain 1 of 1, from 63 to 198: score 115.2, E = 1.2e-30
                   *->efRpieietGvlprQAAeGSalvelGddTkVlvtvtgeieppaqtda
                      efR  ++ +G ++   A+GSalv+lG +T V+++v++e + p+    
   mKIAA4013    63    EFRATTVNIGSIST--ADGSALVKLG-NTTVICGVKAEFAAPP---- 102  

                   QvllsldpplkglleveynaapfstgerkrREseGrptdrreveisrLid
                         d p++g+++ +++++p++++ ++     G+p +++++ +s+ i 
   mKIAA4013   103 -----VDAPDRGYVVPNVDLPPLCSSRFR----TGPP-GEEAQVTSQFIA 142  

                   RalrpsrlidleklcI.egkpewqirvdvevlesdGstaprdaainAasl
                     +  s  i++e lcI++gk  w+++ d  +l++dG+   +da+ +A  +
   mKIAA4013   143 DVVDNSQVIKKEDLCIsPGKLAWVLYCDLICLDYDGNI--LDACTFALLA 190  

                   ALadAgiP<-*
                   AL ++++P   
   mKIAA4013   191 ALKNVQLP    198  

RNase_PH_C: domain 1 of 1, from 223 to 290: score 47.2, E = 3.7e-10
                   *->dpvaavtvGlvddqdeTeeeiilwlDptaeEdsllsdadlvVagted
                      + ++a +++++dd+        + +Dpt+eE++ ls+++l+V+  ed
   mKIAA4013   223    TNPVATSFAVFDDT------LLI-VDPTGEEEH-LSTGTLTVVTDED 261  

                   GkskrksivalqmdalGkgnglteelleealelAkeg<-*
                   G      +++l++ +   g glt  +l  ++  A+ +   
   mKIAA4013   262 G-----KLCCLHKPG---GSGLTGAKLQDCMSRAVTR    290  

//