hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh05011/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4009  ( 381 res)   mnh05011

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
E2F_TDP  E2F/DP family winged-helix DNA-binding domai   127.0    3.4e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
E2F_TDP    1/1      73   138 ..     1    87 []   127.0  3.4e-34

Alignments of top-scoring domains:
E2F_TDP: domain 1 of 1, from 73 to 138: score 127.0, E = 3.4e-34
                   *->RkekSLglLtqkFlklleksedkgivdLnevAkeLvsefadsnnhaq
                      R+e+SL l t++Fl+ll++s d g+vdLn++A+ L            
   mKIAA4009    73    RYETSLNLTTKRFLELLSRSAD-GVVDLNWAAEVL------------ 106  

                   eYdvknqkRRiYDItNVLegiglIeKtHvlksKneirWkG<-*
                     +v  qkRRiYDItNVLegi lI+K    ksKn+i+W G   
   mKIAA4009   107 --KV--QKRRIYDITNVLEGIQLIAK----KSKNHIQWLG    138  

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