hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03492/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4006  ( 502 res)   mpj03492

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
B56      Protein phosphatase 2A regulatory B subunit   1041.6          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
B56        1/1     113   502 .]     1   412 []  1041.6        0

Alignments of top-scoring domains:
B56: domain 1 of 1, from 113 to 502: score 1041.6, E = 0
                   *->pLPsfkDvpasEkeeLfikKLeqCcvvFDFtDPlkdlkeKEiKRqtL
                      pLP++kDvp+sE++eLf+kKL+qCcv+FDF+D+l+dlk+KE+KR tL
   mKIAA4006   113    PLPLLKDVPTSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTL 159  

                   lELvDyvtssrgkltEavypeivkMvsvNlFRtLpPssnenkeefDpeED
                   +ELvDy+t srg ltE++ype+v+Mvs+N+FRtLpPs+ +   efDpeED
   mKIAA4006   160 NELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPSDSN---EFDPEED 206  

                   EPtLEpAWPHLQlVYELFLRFleSPdfdakvAKrYiDqkFvlrLLdLFDS
                   EPtLE++WPHLQlVYE+F+RFleS++f++++AK+YiDqkFvl+LL+LFDS
   mKIAA4006   207 EPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 256  

                   EDPRERdfLKTiLHRIYGKFLvlRaFIRKqiNNIFyrFiYEtEkhNGIAE
                   EDPRERd+LKT+LHRIYGKFL+lRaFIRKqiNNIF+rF+YEtE++NG+AE
   mKIAA4006   257 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAE 306  

                   LLEILGSIINGFALPLKeEHKiFLvRVLiPLHkpKslslYHqQLaYCiVQ
                   LLEILGSIINGFALPLK+EHK+FLv+VLiPLH+++slsl+H+QLaYCiVQ
   mKIAA4006   307 LLEILGSIINGFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQ 356  

                   FvEKDpkLtetVIrGLLKyWPktnSqKEVmFLgElEEILeviePaEFqKi
                   F+EKDp+Lte+VIrGL K+WPkt+SqKEVmFLgElEEIL+vieP++F+Ki
   mKIAA4006   357 FLEKDPSLTEPVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKI 406  

                   mvPLFrQIArCvsSsHFQVAERALylWNNeyivsLIeqNrkvILPIiFPa
                   ++PLF+QIA+CvsS+HFQVAERALy+WNNeyi+sLIe+N++vILPI+F +
   mKIAA4006   407 QEPLFKQIAKCVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSS 456  

                   LernskeHWNqtihsLvyNVlKlFmEmdqkLFdectakYkedrakekeke
                   L+r+skeHWN++i++LvyNVlK FmEm++ +Fde+ta+Yk+dr++e    
   mKIAA4006   457 LYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATYKSDRQRE---- 502  

                   ekReelWkkLEelas<-*
                                     
   mKIAA4006     - ---------------    -    

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