hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj27181/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4005  ( 818 res)   mfj27181

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BROMO    bromo domain                                   328.3    5.1e-94   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BROMO      1/2      91   201 ..     1   118 []   159.4  3.5e-43
BROMO      2/2     365   474 ..     1   118 []   173.6  1.9e-47

Alignments of top-scoring domains:
BROMO: domain 1 of 2, from 91 to 201: score 159.4, E = 3.5e-43
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      + +  ++lq l k+++++l +h        ++awpF++pvd+++Lg+
   mKIAA4005    91    PGRvTNQLQYLHKVVMKALWKH--------QFAWPFRQPVDAVKLGL 129  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDY++iIk+PMD++tIk++len++Y+ + e ++Dfn mf+N+++YN+p  
   mKIAA4005   130 PDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTD 179  

                   evykdAkkLeklfeeklkelpp<-*
                   ++  +A++Lek f++k + +p+   
   mKIAA4005   180 DIVLMAQTLEKIFLQKVASMPQ    201  

BROMO: domain 2 of 2, from 365 to 474: score 173.6, E = 1.9e-47
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                       ++++k ++ +lk+ll+k++           +awpF++pvd++ Lg+
   mKIAA4005   365    LSEqLKHCNGILKELLSKKHAA---------YAWPFYKPVDASALGL 402  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   +DY+diIk+PMDL+t+k+k+en+ Y++++eF+aD++LmfsN+++YN+pd+
   mKIAA4005   403 HDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDH 452  

                   evykdAkkLeklfeeklkelpp<-*
                   +v  +A+kL+++fe +++++p+   
   mKIAA4005   453 DVVAMARKLQDVFEFRYAKMPD    474  

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