hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj27181/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4005  ( 818 res)   mfj27181

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Bromodomain Bromodomain                                 305.1    8.3e-88   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Bromodomain   1/2      98   187 ..     1    92 []   155.3  1.1e-42
Bromodomain   2/2     371   460 ..     1    92 []   154.7  1.5e-42

Alignments of top-scoring domains:
Bromodomain: domain 1 of 2, from 98 to 187: score 155.3, E = 1.1e-42
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l++l++ v++al++h  +a+pf++pV+++kl+lPDY++iIk+PMD++
   mKIAA4005    98    LQYLHKVVMKALWKHQ-FAWPFRQPVDAVKLGLPDYHKIIKQPMDMG 143  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TIk++l+n++Y + + e+++Dfn mf+N+++YN+p  +++ +A++   
   mKIAA4005   144 TIKRRLENNYY-WAASECMQDFNTMFTNCYIYNKPTDDIVLMAQT    187  

Bromodomain: domain 2 of 2, from 371 to 460: score 154.7, E = 1.5e-42
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +++ +lk+l+ ++++  +a+pf++pV++s+l+l+DY++iIk+PMDL+
   mKIAA4005   371    HCNGILKELLSKKHAA-YAWPFYKPVDASALGLHDYHDIIKHPMDLS 416  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T+k+k++n+ Y ++++eF aD++LmfsN+++YN+pd++v+ +A+k   
   mKIAA4005   417 TVKRKMENRDY-RDAQEFAADVRLMFSNCYKYNPPDHDVVAMARK    460  

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