hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj10260/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4003  ( 677 res)   mfj10260

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MCM      minichromosome  maintenance proteins          1068.8          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MCM        1/1      81   584 ..     1   591 []  1068.8        0

Alignments of top-scoring domains:
MCM: domain 1 of 1, from 81 to 584: score 1068.8, E = 0
                   *->kplsiReLradhlgkLVrvsGiVTRtSeVrPklkrasftCekCgatl
                      k++s+R+L+++++++L+++sG+V+RtS+++P++++a+f+C++C++t+
   mKIAA4003    81    KTKSMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHTT 127  

                   rpeiqdYsgreteptvCppesCqsptsdgGkkkCendPfslnheraSkFi
                   r+ei+  +gr++ep +C    C++++s           + l+h+r S F+
   mKIAA4003   128 RVEID--RGRIAEPCSCVH--CHTTHS-----------MALIHNR-SFFS 161  

                   DfQkiklQEsPeeVPaGqlPRsvdvildgdLVDkvkPGDrVevTGIyrnv
                   D+Q+iklQEsPe++PaGq+P+++ +++++dLVDkv+PGDrV+vTGIyr+v
   mKIAA4003   162 DKQMIKLQESPEDMPAGQTPHTIVLFAHNDLVDKVQPGDRVNVTGIYRAV 211  

                   PdrtgfklntakglpkgdnRGivfaTyieanhVrkldikrsfeacsiieg
                   P+r+++++ ++k+++k         T+i+++h+rk+d kr+++       
   mKIAA4003   212 PIRVNPRVSNVKSVYK---------THIDVIHYRKTDAKRLHG------- 245  

                   dasqeeeeqDekdevsslsdeeeeeirklskdSpdIyekLskSlAPSIYG
                     ++ee+eq      +++s+++++ +++ls++ pdIye+L++ lAPSIY+
   mKIAA4003   246 --LDEEAEQ------KLFSEKRVKLLKELSRK-PDIYERLASALAPSIYE 286  

                   hedIKKAILLlLfGGveKnlpdgm.ikiRGDINiLLlGDPGTAKSQlLKY
                   hedIKK+ILL+LfGG++K++++++++k+R +INiLL+GDPGT+KSQlL+Y
   mKIAA4003   287 HEDIKKGILLQLFGGTRKDFSHTGrGKFRAEINILLCGDPGTSKSQLLQY 336  

                   VekvAPRAVYTtGKGSSAVGLTAaVtrDpeTrEftLEgGALVLADnGVCC
                   V+++ PR++YT+GKGSSAVGLTA+V++DpeTr+++L++GALVL+DnG+CC
   mKIAA4003   337 VYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICC 386  

                   IDEFDKMddsDRtAIHEaMEQQTISIAKAGItTtLNARcSvLAAANPigG
                   IDEFDKM++s+R+++HE+MEQQT SIAKAGI+++LNAR+SvLAAANPi +
   mKIAA4003   387 IDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIES 436  

                   RYdpkltpaeNIdLpapiLSRFDLlFvVlDevDeerDreLAkHVvdlHrr
                   +++pk+t+ eNI+Lp+++LSRFDL+F++lD +De +Dr+LA+H+v+l+++
   mKIAA4003   437 QWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQ 486  

                   shPgedegeaLplGeadieetedeevsAaegeedqEqiaekhdnLlqvke
                   s                 ee+ +ee+                        
   mKIAA4003   487 S-----------------EEQVEEEF------------------------ 495  

                   isiefLrkYIaYARekikPkLseeaaeklvkaYvdlRkedsqseaDskrs
                   +++++L++YIaYA+ +i+P+Lseea + l++aYv +Rk +s ++    + 
   mKIAA4003   496 LDMAVLKDYIAYAHSTIMPRLSEEASQALIEAYVNMRKIGSSRG----MV 541  

                   SiPITvRqLESiIRLsEAlAKlrLsdvVeeaDVeeAirLlreSii<-*
                   S  +++RqLES+IRL+EA+AK+r+s++Ve  DVeeA rL+re+++   
   mKIAA4003   542 S--AYPRQLESLIRLAEAHAKVRFSNKVEAIDVEEAKRLHREALK    584  

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