hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj03141/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4002  ( 218 res)   mfj03141

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MRG      MRG                                            293.4    2.8e-84   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MRG        1/1       2   206 ..     1   542 []   293.4  2.8e-84

Alignments of top-scoring domains:
MRG: domain 1 of 1, from 2 to 206: score 293.4, E = 2.8e-84
                   *->ssWDEwVpVGEEedRiLKytEENlklQreLakkAaarlqkttsklke
                            Vp                                +      
   mKIAA4002     2    ------VP--------------------------------P------ 4    

                   arkkkrlslPgvdsslkGkrseesesndskspttssspktkseegGHVed
                           lP                                        
   mKIAA4002     5 --------LPC---------------------------------I----- 8    

                   ptadkddtttvakkkkkkkpengnddstspftpDFGsfkkldeAlAktrk
                            +  +      p+ng+++sts                    +
   mKIAA4002     9 ---------HFVA------PGNGDGGSTS--------------------E 23   

                   peePtakKrkrrSedrsslrssDaaGNRsRDNSsGkkKekdkSGDkrldG
                   +++P++kKr                                         
   mKIAA4002    24 TPQPPRKKR----------------------------------------- 32   

                   eRrrvaekflrvtpkDvertdssplvEeednfaaempapkikieIPeeLK
                                    +r+d  p+vE+e++f++++   ++k++IPeeLK
   mKIAA4002    33 -----------------ARVD--PTVENEETFMNRV---EVKVKIPEELK 60   

                   klLvDDWeyvtrnkklvaLPakvtVdtILedYlkhiAVelaisikeDSSR
                   ++LvDDW+++tr+k+l++LPak++Vd+ILedY+++               
   mKIAA4002    61 PWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANY--------------- 95   

                   aRnthsRparkmsreelnseskvdalkEvvaGLriYFdvcLGnmLLYkfE
                             k+s  ++n+++k++a++EvvaG+++YF+v+LG++LLYkfE
   mKIAA4002    96 ----------KKS--RGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFE 133  

                   RaQYkEllkkkFFLtDdNmkncslllNkSyEyinPSgdeeLisLrgstpd
                   R+QY+E+l++                                     +pd
   mKIAA4002   134 RPQYAEILAD-------------------------------------HPD 146  

                   TAnCDRLsesngspgpllgqqeyeaqLqKcllyiEKntPvHarsssaipy
                   +                                                 
   mKIAA4002   147 A------------------------------------------------- 147  

                   TaayklpvemrGFlnEtlsWkLlsdnsPpkdqkPlepSqiYGAeHLLRLf
                                                      ++Sq+YGA+HLLRLf
   mKIAA4002   148 -----------------------------------PMSQVYGAPHLLRLF 162  

                   VkLPelLsytnmdeqslerLlkhlddFLkfLakNhdeyFsGesdY<-*
                   V+++++L+yt++de+sl++Ll++l+dFLk+LakN+++ Fs +sdY   
   mKIAA4002   163 VRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFS-ASDY    206  

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