hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic18028/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4001  ( 379 res)   mic18028

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EGF_2    EGF-like domain                                 21.9      0.015   1
EGF      EGF-like domain                                 15.2       0.61   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/1     134   161 ..     1    39 []    15.2     0.61
EGF_2      1/1     134   161 ..     1    37 []    21.9    0.015

Alignments of top-scoring domains:
EGF: domain 1 of 1, from 134 to 161: score 15.2, E = 0.61
                   *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-*
                      C+     C+++G C++      C+C  +     ++ ++C   
   mKIAA4001   134    CAM---QCHGRGVCNNRK---NCHCEAH-----WAPPFC    161  

EGF_2: domain 1 of 1, from 134 to 161: score 21.9, E = 0.015
                   *->C...CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C  +C+g +G+C++  +       C+C+      +  + C   
   mKIAA4001   134    CamqCHG-RGVCNNRKN-------CHCEAH----WAPPFC    161  

//