hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtg/mtg01195/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3028  ( 1661 res)   mtg01195

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA_5    ATPase family associated with various cellul    10.5     0.0036   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA_5      1/1     243   388 ..     1   184 []    10.5   0.0036

Alignments of top-scoring domains:
AAA_5: domain 1 of 1, from 243 to 388: score 10.5, E = 0.0036
                   *->pvlLvGppGtGKtelaerLaaalsgqggrpvfyvqltrdtteedllg
                      pv+LvG++GtGK+ l    ++ ls   ++ v+ v+++ +tt++ l g
   mKIAA3028   243    PVMLVGNAGTGKSVLMGDKLENLSTD-DYLVQAVPFNFYTTSAMLQG 288  

                   rrniaplleGngttswvdgpLvrAaryaretegslpeghilvlDEinras
                    ++                pL +     r++ + ++++ i+++D+ n+ +
   mKIAA3028   289 VLE---------------KPLEKKSG--RNYGPPGTKKLIYFIDDMNMPE 321  

                   pevlnvLl......slLderrlllpdggelvkvppydklaergreeldlw
                    +  ++  +++  +  +d+r+++  d+ +l +++                
   mKIAA3028   322 VDKYGTVAphtlirQHMDHRHWY--DRQKLTLKDVHN------------- 356  

                   klgrlihdfrlIatsNpldgprglnelsaALrrRFlfvtvdpp<-*
                           ++ +a +Np     g   +++ L+r F   +v  p   
   mKIAA3028   357 --------CQYVACMNPTS---GSFTIDPRLQRHFCVFAVSFP    388  

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