hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid05069/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3026  ( 881 res)   mid05069

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     54.1    1.8e-11   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/5     204   229 ..     1    23 []    14.1        8
ZnF_C2H2   2/5     265   289 ..     1    23 []    17.6      1.8
ZnF_C2H2   3/5     324   348 ..     1    23 []    17.3      2.1
ZnF_C2H2   4/5     382   406 ..     1    23 []    23.7    0.026
ZnF_C2H2   5/5     746   770 ..     1    23 []     8.6       34

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 5, from 204 to 229: score 14.1, E = 8
                   *->ykCpi.gCg.ksfssk.aLkrHmrvH<-*
                      y+C  + C+ ++f+sk++ +rH+ +H   
   mKIAA3026   204    YHCLDpECNyQRFTSKqDVIRHYNMH    229  

ZnF_C2H2: domain 2 of 5, from 265 to 289: score 17.6, E = 1.8
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y+C + gC+k+++s ++   H   H   
   mKIAA3026   265    YHCMQvGCNKVYTSTsDVMTHENFH    289  

ZnF_C2H2: domain 3 of 5, from 324 to 348: score 17.3, E = 2.1
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++C  +gC ++f++k + ++H   H   
   mKIAA3026   324    FHCRRpGCTFTFKNKcDIEKHKSYH    348  

ZnF_C2H2: domain 4 of 5, from 382 to 406: score 23.7, E = 0.026
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++C   gCg++f+s ++++ H r+H   
   mKIAA3026   382    FHCIRaGCGFTFTSTsQMTSHKRKH    406  

ZnF_C2H2: domain 5 of 5, from 746 to 770: score 8.6, E = 34
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++C ++ Cg  fs+ +  ++H   H   
   mKIAA3026   746    FHCVVeECGALFSTLdGAIKHANFH    770  

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