hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid05069/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3026  ( 881 res)   mid05069

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          37.3    3.4e-07   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/5     204   229 ..     1    24 []     8.0       17
zf-C2H2    2/5     265   289 ..     1    24 []    14.3        3
zf-C2H2    3/5     324   348 ..     1    24 []    10.1       10
zf-C2H2    4/5     382   406 ..     1    24 []    16.8      0.5
zf-C2H2    5/5     746   770 ..     1    24 []    13.8      4.3

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 5, from 204 to 229: score 8.0, E = 17
                   *->ykCpf.dCg.ksFsrksnLkrHlrtH<-*
                      y C  ++C+ ++F++k +  rH ++H   
   mKIAA3026   204    YHCLDpECNyQRFTSKQDVIRHYNMH    229  

zf-C2H2: domain 2 of 5, from 265 to 289: score 14.3, E = 3
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y C   +C+k++++ s+  +H + H   
   mKIAA3026   265    YHCMQvGCNKVYTSTSDVMTHENFH    289  

zf-C2H2: domain 3 of 5, from 324 to 348: score 10.1, E = 10
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      + C  ++C  +F++k + ++H+  H   
   mKIAA3026   324    FHCRRpGCTFTFKNKCDIEKHKSYH    348  

zf-C2H2: domain 4 of 5, from 382 to 406: score 16.8, E = 0.5
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      + C   +Cg +F++ s++++H+r+H   
   mKIAA3026   382    FHCIRaGCGFTFTSTSQMTSHKRKH    406  

zf-C2H2: domain 5 of 5, from 746 to 770: score 13.8, E = 4.3
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      + C +++Cg  Fs+ +   +H + H   
   mKIAA3026   746    FHCVVeECGALFSTLDGAIKHANFH    770  

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