hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj07190/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA3024 ( 898 res) mfj07190 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IG Immunoglobulin 235.0 6.5e-66 5 IGc2 Immunoglobulin C-2 Type 210.2 1.9e-58 4 FN3 Fibronectin type 3 domain 107.2 1.9e-27 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IG 1/5 1 87 [. 1 58 [] 36.4 3.9e-06 IGc2 1/4 110 174 .. 1 56 [] 73.9 2e-17 IG 2/5 104 185 .. 1 58 [] 44.6 1.3e-08 IGc2 2/4 200 263 .. 1 56 [] 62.2 6.4e-14 IG 3/5 194 274 .. 1 58 [] 45.0 9.6e-09 IGc2 3/4 292 356 .. 1 56 [] 49.8 3.6e-10 IG 4/5 286 367 .. 1 58 [] 60.8 1.8e-13 IGc2 4/4 382 455 .. 1 56 [] 24.2 0.016 IG 5/5 376 466 .. 1 58 [] 48.2 1.1e-09 FN3 1/4 469 555 .. 1 69 [] 53.1 3.6e-11 FN3 2/4 572 658 .. 1 69 [] 10.2 14 FN3 3/4 673 758 .. 1 69 [] 36.7 3.1e-06 FN3 4/4 773 853 .. 1 69 [] 17.2 2.2 Alignments of top-scoring domains: IG: domain 1 of 5, from 1 to 87: score 36.4, E = 3.9e-06 *->pp.vtvkeGesvtLtC.as......titWy................. ++v+v++G+ +L C+ +++++ ++ W + ++ +++++ ++ mKIAA3024 1 RStVSVRRGQGMVLLCgPPphsgelSYAWIfneypsyqdnrrfvsqe 47 ...LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* +++L I +v+++D G+YtC++t++ +++++ + ++t L+ + mKIAA3024 48 tgnLYIaKVEKSDV---GNYTCVVTntvtNHKVLG-PPTPLILR 87 IGc2: domain 1 of 4, from 110 to 174: score 73.9, E = 2e-17 *->leGqsVtLtCpasgdpvpnItWlk..gkplp.......sgstLtikn + G++V L+C+a g+pvp+I W++ +gkp++++ ++++s++ L+i n mKIAA3024 110 EKGTTVKLECFALGNPVPTILWRRadGKPIArkarrhkSNGILEIPN 156 vsleDsGlYtCvArNsvg<-* ++ eD+G Y+CvA+Ns g mKIAA3024 157 FQQEDAGSYECVAENSRG 174 IG: domain 2 of 5, from 104 to 185: score 44.6, E = 1.3e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++v + G +v+L+C a +++ +ti W++ ++++ ++ +++++++ mKIAA3024 104 PEtVPAEKGTTVKLECfALgnpvpTILWRradgkpiarkarrhksng 150 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+I+n + eD+ G Y C+a+++ g+ + +Lt + mKIAA3024 151 iLEIpNFQQEDA---GSYECVAEnsRGKNVA--KGQLTFY 185 IGc2: domain 2 of 4, from 200 to 263: score 62.2, E = 6.4e-14 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv + +sV ++C+a+g+p p+ +Wlk+g pl ++++ + +tL+i+ v mKIAA3024 200 AMEESVFWECKANGRPKPTYRWLKnGDPLLtrdriqiEQGTLNITIV 246 sleDsGlYtCvArNsvg<-* l+D+G+Y+CvA+N++g mKIAA3024 247 NLSDAGMYQCVAENKHG 263 IG: domain 3 of 5, from 194 to 274: score 45.0, E = 9.6e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ v esv +C+a++ +++t++W++++++ ++++ + +++ mKIAA3024 194 INdIHVAMEESVFWECkANgrpkpTYRWLkngdplltrdriqieqgt 240 LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+I+ v ++D+ G Y+C+a++++g+++s +++L+V mKIAA3024 241 LNItIVNLSDA---GMYQCVAEnkHGVIFS--SAELSVI 274 IGc2: domain 3 of 4, from 292 to 356: score 49.8, E = 3.6e-10 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn + G+ V+++C+ ++p p tW+k+ + l ++++ + + ++ L+i n mKIAA3024 292 KVGGEVVIECKPKASPRPVYTWRKgREILReneritisEDGNLRIIN 338 vsleDsGlYtCvArNsvg<-* v+++D+G YtC+A+N+ g mKIAA3024 339 VTKSDAGSYTCIATNHFG 356 IG: domain 4 of 5, from 286 to 367: score 60.8, E = 1.8e-13 *->pp.vtvkeGesvtLtC.as.....titWy.................. + ++vk+G+ v+++C+ + ++ + +tW++++ + + + + + ++ mKIAA3024 286 KRvTLVKVGGEVVIECkPKasprpVYTWRkgreilreneritisedg 332 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L+I nvt++D+ G YtC at++ g+ass + +++V+ mKIAA3024 333 nLRIiNVTKSDA---GSYTCIATnhFGTASS--TGNVIVK 367 IGc2: domain 4 of 4, from 382 to 455: score 24.2, E = 0.016 *->leGqsVtLtCpasgdp..vpnItWlk.gkplp............... G+s++L+C ++ d++ + +tW+++g ++ ++++++ ++ ++++ mKIAA3024 382 TVGESIVLPCQVTHDHslDIVFTWTFnGHLIDfdkdgdhfervggqd 428 sgstLtiknvsleDsGlYtCvArNsvg<-* s + L i+n++l ++G+Y+C ++ sv mKIAA3024 429 SAGDLMIRNIQLKHAGKYVCMVQTSVD 455 IG: domain 5 of 5, from 376 to 466: score 48.2, E = 1.1e-09 *->pp.vtvkeGesvtLtC.as.......titWy................ p+++ v +Ges++L+C+++++++ + +tW+ +++ + ++++++ mKIAA3024 376 PSsMDVTVGESIVLPCqVThdhsldiVFTWTfnghlidfdkdgdhfe 422 ..........LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<- + +++++ ++L I+n+++ ++ G Y+C++++s ++ s + L+V+ mKIAA3024 423 rvggqdsagdLMIrNIQLKHA---GKYVCMVQtSVDKLS-VAADLIVR 466 * mKIAA3024 - - FN3: domain 1 of 4, from 469 to 555: score 53.1, E = 3.6e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... PgpP+ +++ ++t+t +++lsW p ++++++i+ Y+ + mKIAA3024 469 PGPPEA---VTIDEITDT------TAQLSWRPGpdnhspITMYViqa 506 ........................ytltgLkPgaepwteYefrVrAvngn +++ +++++ ++++++ +++++ ++t+ gL P+ eYefr +A n mKIAA3024 507 rtpfsvgwqavntvpdlvdgktftATVVGLNPW----VEYEFRTVAANV- 551 daGeg<-* G+g mKIAA3024 552 -IGIG 555 [output cut off at A = 10 top alignments] //