hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj07190/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA3024 ( 898 res) mfj07190 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- I-set Immunoglobulin I-set domain 190.9 2e-53 4 fn3 Fibronectin type III domain 155.8 7.2e-43 4 ig Immunoglobulin domain 154.9 1.4e-42 5 V-set Immunoglobulin V-set domain 51.9 1.4e-11 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/5 9 68 .. 1 65 [] 12.2 3.3 ig 2/5 112 169 .. 1 65 [] 38.3 1.8e-07 V-set 1/3 98 185 .. 1 130 [] 14.2 0.023 I-set 1/4 97 185 .. 1 97 [] 48.2 1.8e-10 ig 3/5 202 258 .. 1 65 [] 29.1 0.0001 I-set 2/4 188 274 .. 1 97 [] 57.8 2.4e-13 ig 4/5 294 351 .. 1 65 [] 37.3 3.5e-07 V-set 2/3 278 367 .. 1 130 [] 29.0 0.00011 I-set 3/4 278 367 .. 1 97 [] 71.4 1.9e-17 ig 5/5 384 450 .. 1 65 [] 38.0 2.1e-07 V-set 3/3 369 466 .. 1 130 [] 8.7 0.082 I-set 4/4 370 466 .. 1 97 [] 13.5 0.00099 fn3 1/4 469 558 .. 1 84 [] 75.9 8.5e-19 fn3 2/4 571 661 .. 1 84 [] 21.4 0.013 fn3 3/4 673 761 .. 1 84 [] 51.7 1.6e-11 fn3 4/4 773 856 .. 1 84 [] 19.7 0.019 Alignments of top-scoring domains: ig: domain 1 of 5, from 9 to 68: score 12.2, E = 3.3 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ + L C +++ + ++ W +n + ++++ +s++ g+ mKIAA3024 9 GQGMVLLCGPP-PHSGELSYAWIFNEYpSYqDNRRFVSQETGN---- 50 tsLtitnvtpeDggtYtCvv<-* L i +v+++D g+YtCvv mKIAA3024 51 --LYIAKVEKSDVGNYTCVV 68 ig: domain 2 of 5, from 112 to 169: score 38.3, E = 1.8e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +v+L C + g+p +t+ W+r++++ + + n+ mKIAA3024 112 GTTVKLECFA--LGNPVPTILWRRADGkPIaRKARRHKSNGI----- 151 tsLtitnvtpeDggtYtCvv<-* L i n+++eD+g+Y Cv+ mKIAA3024 152 --LEIPNFQQEDAGSYECVA 169 V-set: domain 1 of 3, from 98 to 185: score 14.2, E = 0.023 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss ++v+ p+ v ++ G++v+L C+ + mKIAA3024 98 KIEVQF--PE----------TVPAEKGTTVKLECFAL----GN---- 124 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg + ++ W r +++p + k r++ mKIAA3024 125 PVPTILWRRAdGKP---------------IAR----------KARRH--- 146 npskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* k++ L I n q++D G Y C+ +++++++ +Lt mKIAA3024 147 ---KSNGILEIPNFQQEDAGSYECVaensrgknVAKGQLTFY 185 I-set: domain 1 of 4, from 97 to 185: score 48.2, E = 1.8e-10 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvl Pk++ + ++ v + G ++++eC + G+P Pt+ W + +G+p+ mKIAA3024 97 PKIEVQFpETVPAEKGTTVKLECFALGNPVPTILWRRAdGKPIAR-- 141 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt k + + + L+I+n q +D+G Y CvA+Ns G+ a+ +Lt mKIAA3024 142 ------KARRHK--SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 183 Vq<-* + mKIAA3024 184 FY 185 ig: domain 3 of 5, from 202 to 258: score 29.1, E = 0.0001 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq +esv C + g p +t++Wl+ng +l + +++ + + mKIAA3024 202 EESVFWECKA--NGRPKPTYRWLKNGDpLLtRDRIQIEQGT------ 240 tsLtitnvtpeDggtYtCvv<-* L+it v +D+g Y Cv+ mKIAA3024 241 --LNITIVNLSDAGMYQCVA 258 I-set: domain 2 of 4, from 188 to 274: score 57.8, E = 2.4e-13 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P +q++ d+ V+ es++ eCk+ G P+Pt W+K+G pl mKIAA3024 188 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT---- 230 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq r ++ + tL I v+ +D+G Y CvA+N+ G +saeL V mKIAA3024 231 --RDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 274 <-* mKIAA3024 - - ig: domain 4 of 5, from 294 to 351: score 37.3, E = 3.5e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v + C + ++p + +tW+++ l + +++t+se+++ mKIAA3024 294 GGEVVIECKPK--ASPRPVYTWRKGREiLReNERITISEDGN----- 333 tsLtitnvtpeDggtYtCvv<-* L+i nvt++D+g+YtC + mKIAA3024 334 --LRIINVTKSDAGSYTCIA 351 V-set: domain 2 of 3, from 278 to 367: score 29.0, E = 0.00011 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + ++ r + v++Gg v + C+++ ++ mKIAA3024 278 PDFSRTLLKR----------VTLVKVGGEVVIECKPK---ASP---- 307 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++ ++W + ++ r ++r+++s + mKIAA3024 308 RP-VYTWRK-GRE------------------------ILRENERITISED 331 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* ++ L+I n++ sD G Y+C +++ ++ + +++V+ mKIAA3024 332 GN-----LRIINVTKSDAGSYTCIatnhfgtaSSTGNVIVK 367 I-set: domain 3 of 4, from 278 to 367: score 71.4, E = 1.9e-17 *->PkFtqkp.kdve.VqeGesarfeCkVtGtPePtVsWfKdGqplssvl P F++ + k+v+ V++G ++ eCk + +P P +W K+ + l++ mKIAA3024 278 PDFSRTLlKRVTlVKVGGEVVIECKPKASPRPVYTWRKGREILRE-- 322 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt +r+ +++dg L+I nv+++D+G YtC+AtN +G+a+++ +++ mKIAA3024 323 --NERITISEDG-----NLRIINVTKSDAGSYTCIATNHFGTASSTGNVI 365 Vq<-* V+ mKIAA3024 366 VK 367 ig: domain 5 of 5, from 384 to 450: score 38.0, E = 2.1e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty Ges L+C+v++ ++ d+ +tW++ng+ + + +++++ + +g+ + mKIAA3024 384 GESIVLPCQVTHDHSLDIVFTWTFNGHlIDfDKDGDhFERVGGQDSA 430 qtsLtitnvtpeDggtYtCvv<-* ++ L i+n++ ++g Y C+v mKIAA3024 431 GD-LMIRNIQLKHAGKYVCMV 450 V-set: domain 3 of 3, from 369 to 466: score 8.7, E = 0.082 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + v pp+ s v +G+s+ LpC+++ d+ s mKIAA3024 369 PTKVMV-PPS----------SMDVTVGESIVLPCQVT---HDH--SL 399 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++ ++W + ng+ + k+ +f + mKIAA3024 400 DI-VFTWTF------------------------NGHLIDFDKDGDHFERV 424 ps.kgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* +++++ L I+n+ql + G Y C ++ ++ L+V+ mKIAA3024 425 GGqDSAGDLMIRNIQLKHAGKYVCMvqtsvdklSVAADLIVR 466 I-set: domain 4 of 4, from 370 to 466: score 13.5, E = 0.00099 *->PkFtqkpkdveVqeGesarfeCkVtGt..PePtVsWfKdGqplssvl k +p+++ V++Ges+++ C+Vt +++ + +W+ +G + mKIAA3024 370 TKVMVPPSSMDVTVGESIVLPCQVTHDhsLDIVFTWTFNGHLIDF-- 414 lpsdrfkvtydgGsgtyt.LtIsnvqpdDsGkYtCvAtNsaGeaeasaeL + d ++ +gG + + +L+I+n+q +GkY+C ++ s+ + ++ a L mKIAA3024 415 -DKDGDHFERVGGQDSAGdLMIRNIQLKHAGKYVCMVQTSVDKLSVAADL 463 tVq<-* +V+ mKIAA3024 464 IVR 466 fn3: domain 1 of 4, from 469 to 558: score 75.9, E = 8.5e-19 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpknggew P++P+ +t+ ++t+t+++lsW p +++++pit Y ++ R + + +w mKIAA3024 469 PGPPEAVTIDEITDTTAQLSWRPGPdNHSPITMYVIQAR-TPFSVGW 514 neltvpgt.....ttsytltgLkPgteYevrVqAvnggG.GpeS<-* + ++ ++ +++t ++t+ gL+P +eYe+r +A n +G G++S mKIAA3024 515 QAVNTVPDlvdgkTFTATVVGLNPWVEYEFRTVAANVIGiGEPS 558 fn3: domain 2 of 4, from 571 to 661: score 21.4, E = 0.013 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+ P n++ + + ++l+++W+ +++ ng gY v R p ++ mKIAA3024 571 PeVTPANVSGGGGSKSELVITWETVPeelQNGRGFGYVVAFR-PHGK 616 ge.wneltvpgtttsytltg..LkPgteYevrVqAvnggG.GpeS<-* + ++ + ++++y++++++ +P ++ ev+V n++G+Gp+S mKIAA3024 617 MIwMLTVLASADASRYVFRNesVRPFSPFEVKVGVFNNKGeGPFS 661 fn3: domain 3 of 4, from 673 to 761: score 51.7, E = 1.6e-11 *->PsaP.tnltvtdvtstsltlsWsppt..gngpitgYevtyRqpkngg P +P+ + ++++++t + + W p ++++g i+gYev+y + ++ mKIAA3024 673 PTKPpASIFARSLSATDIEVFWASPIgkNRGRIQGYEVKY-WRHDDK 718 e..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* e++ + ++ g++ts +t+Lk Y+++V+A+n +G+Gp S mKIAA3024 719 EenAKKIRTVGNQTSTKITNLKGSALYHLSVKAYNSAGtGPSS 761 fn3: domain 4 of 4, from 773 to 856: score 19.7, E = 0.019 *->PsaP.tnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng Ps+P++n+ + + +++ + l+W+ + ++ +++ gY+v yR++ + mKIAA3024 773 PSQPpGNI-IWNSSDSKIILNWDQVKaldNESEVKGYKVLYRWNRQS 818 gewneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* ++++ ++ t s++l+ L + +Y + ++ ++gG+G S mKIAA3024 819 S--TSVIETNKT-SVELS-LPFDEDYIIEIKPFSDGGdGSSS 856 //