hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm03294/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA3023 ( 1305 res) mpm03294 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase_Tyr Protein tyrosine kinase 455.9 3.4e-133 1 Furin-like Furin-like cysteine rich region 309.5 3.9e-89 1 Recep_L_domain Receptor L domain 248.5 9.1e-71 2 Pkinase Protein kinase domain 139.8 4.9e-38 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Recep_L_domain 1/2 101 223 .. 1 145 [] 135.0 1.4e-36 Furin-like 1/1 239 393 .. 1 179 [] 309.5 3.9e-89 Recep_L_domain 2/2 416 536 .. 1 145 [] 113.5 4e-30 Pkinase 1/1 770 1026 .. 1 287 [] 139.8 4.9e-38 Pkinase_Tyr 1/1 770 1026 .. 1 272 [] 455.9 3.4e-133 Alignments of top-scoring domains: Recep_L_domain: domain 1 of 2, from 101 to 223: score 135.0, E = 1.4e-36 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee +C+v+ GnLe+t+ n +ls+L+ i+e mKIAA3023 101 GCQVVQGNLELTYLPAN-------------------ASLSFLQDIQE 128 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl + Gy+lI+++ v+ +L++Lr++rG++lf+d +yal++ldN++ mKIAA3023 129 VQGYMLIAHN---RVKHVPLQRLRIVRGTQLFED----KYALAVLDNRDP 171 nkss.........sGLeeLglpsLkeItskgGgvyihnNpHPkLCytete ++ ++ +++++ GL+eL+l+sL+eI+ Ggv i Np +LCy + mKIAA3023 172 LDNVttaapgrtpEGLRELQLRSLTEILK--GGVLIRGNP--QLCYQDM- 216 idwflit<-* ++w++ + mKIAA3023 217 VLWKDVL 223 Furin-like: domain 1 of 1, from 239 to 393: score 309.5, E = 3.9e-89 *->greCpkvChGTleakGesCkkttiNGefdyRCWGsgpedCQklTKlv +r+Cp+ C + Ck+++ CWG++pedCQ lT+++ mKIAA3023 239 SRACPP-CA-------PTCKDNH--------CWGESPEDCQILTGTI 269 CpsqCsgGrrCtgpnptdCCHeeCaGGCTGHGPkdPtDClACRhFyddGi C+s+C+ rC+g++ptdCCHe+Ca+GCT GPk+ +DClAC+hF+++Gi mKIAA3023 270 CTSGCA---RCKGRLPTDCCHEQCAAGCT--GPKH-SDCLACLHFNHSGI 313 CketCPpptyynedTrqvdfNPegkYqfGasCVkeCPsnylvthnGsCvr C+ +CP++ +yn+dT++++ NPeg+Y+fGasCV++CP+nyl+t++GsC++ mKIAA3023 314 CELHCPALITYNTDTFESMLNPEGRYTFGASCVTTCPYNYLSTEVGSCTL 363 sCPsgHktevgAesGvreCekCReGpCPKvCe<-* +CP++ ++ev+Ae+G+++CekC ++pC+ vC+ mKIAA3023 364 VCPPN-NQEVTAEDGTQRCEKC-SKPCAGVCY 393 Recep_L_domain: domain 2 of 2, from 416 to 536: score 113.5, E = 4e-30 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee +C +I+G+L ++++s+ g++ s+++++ ++ l +++++ee mKIAA3023 416 GCKKIFGSLAFLPESFDGNP--SSGVAPLKPE-----HLQVFETLEE 455 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl itGyL+I +p ++++ls+++NLrvIrGr l+d+ y+l mKIAA3023 456 ITGYLYISAWPESFQDLSVFQNLRVIRGRILHDG----AYSLTLQGLG-- 499 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- + +Lgl+sL+e+ s G ih+N LC+++t + w++++ mKIAA3023 500 ------IHSLGLRSLRELGS--GLALIHRNT--HLCFVNT-VPWDQLF 536 * mKIAA3023 - - Pkinase: domain 1 of 1, from 770 to 1026: score 139.8, E = 4.9e-38 *->yelleklGsGsfGtVykakhkgtgk....iVAvKiikkr.kekskkd +++l++lGsG+fGtVyk++++ +g++ + VA+K+++ ++ k +k+ mKIAA3023 770 LRKLKVLGSGAFGTVYKGIWIPDGEnvkiPVAIKVLRENtSPKANKE 816 ktarrrsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLf + + E+++++ +++p++ rl++++ + + lV+ +++ G L mKIAA3023 817 ILD----EAYVMAGVGSPYVSRLLGICL-TSTVQLVTQLMPYG----CLL 857 dylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILl d+++ + +g+l +++ +++ Qi++g+ YL + + +HRDL N+L+ mKIAA3023 858 DHVR--EHRGRL--GSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLV 903 dengvvdaflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggng ++ ++v Ki+DFGlA++l+ + ++++ + + +mA E +l ++ mKIAA3023 904 KSPNHV----KITDFGLARLLDiDeTEYhADGGKVPIKWMALESIL-RRR 948 ygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpplef ++ +DvWS+Gv+++el+t G P++g + + l++k + mKIAA3023 949 FTHQSDVWSYGVTVWELMTfGAKPYDGI---PaREIPDLLEKGER----L 991 dspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf + p + + ++ kc+ D ++R+ ++e++ f mKIAA3023 992 PQPPICT-------------IDVYMIMVKCWMIDSECRPRFRELVSE--F 1026 <-* mKIAA3023 - - Pkinase_Tyr: domain 1 of 1, from 770 to 1026: score 455.9, E = 3.4e-133 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie l+++k+LG+GaFG+VykG++ ++ge+ ki+VA+K+L+e ++s+++ mKIAA3023 770 LRKLKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRE-NTSPKA-- 813 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++ l EA +M p + rLlG+c+ + +Vt +m++G+L mKIAA3023 814 NKEILDEAYVMAGV-GSPYVSRLLGICL--TST----VQLVTQLMPYGCL 856 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ld+ r+h +++L +dLl++++QiAkGM+YLe+ ++vHRDLAARN+LV mKIAA3023 857 LDHVREH--RGRLGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVK 904 enlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtskS ++++VKI+DFGLaR+++ d+ + +ggk+P+kWmA+Es+ ++Ft++S mKIAA3023 905 SPNHVKITDFGLARLLDIDETE-YHADGGKVPIKWMALESILRRRFTHQS 953 DVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPdel DVWS+GV+ WE++t+G++P Y g++ e+ +ll e+G+RLp+P+ C+ ++ mKIAA3023 954 DVWSYGVTVWELMTFGAKP-YDGIPAREIPDLL-EKGERLPQPPICTIDV 1001 YdlMlqCWaedPedRPtFselverL<-* Y++M +CW+ d e RP+F+elv+++ mKIAA3023 1002 YMIMVKCWMIDSECRPRFRELVSEF 1026 //