hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12853/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3021  ( 756 res)   mbg12853

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1162  Protein of unknown function (DUF1162)           52.2    3.9e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1162    1/1       1   158 [.     1   348 []    52.2  3.9e-12

Alignments of top-scoring domains:
DUF1162: domain 1 of 1, from 1 to 158: score 52.2, E = 3.9e-12
                   *->kvdlLdLsvhvrkipGtaqalvvsifsPYwiiNkTgrmLiyksedtk
                                                                     
   mKIAA3021     -    ----------------------------------------------- -    

                   veaagqieeheeaedrhvkPPEFGlmFSFkdenSWffkknkvrlGkarid
                                      P                              
   mKIAA3021     1 -------------------P------------------------------ 1    

                   nseWSekfSlDtvGsvgevecrakhenknqeYnlGvsikessGkfslTki
                                                                     
   mKIAA3021     - -------------------------------------------------- -    

                   VTftPRyivkNkskvtleFmqvrEegFqddsdk.dkilhipseecipltW
                           v+Nks+++le   v+E++ +d+s +++k+ +++s+ecip+ W
   mKIAA3021     2 --------VANKSSLDLE---VGEIA-SDGSIPtNKWHYVASSECIPF-W 38   

                   prniqkrkLllvrvseckhwsspfFyikevgstllklrksDDddedeeeg
                   p+n +  kL+ v v++ +++s+pfFy+++++ tll+l        ++ +g
   mKIAA3021    39 PENLS-GKLC-VGVVGYEGSSKPFFYNRQDNGTLLSL--------EDLNG 78   

                   girveVnlteatffItftdyhtgpwPfrIkNhttvdilTYyQkgskpase
                   gi v++n++e++++Itf+dyh+g++P++I+Nht +d+lTY+Q+gs     
   mKIAA3021    79 GILVDINTAEHSTVITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQ---- 124  

                   gkkddavderflrsfksietvlpPgseadYaWDdPtgpsKkLvlevgkni
                                    +e vl Pg+++ +aW+dPtg + kL++ +++n 
   mKIAA3021   125 -----------------EELVLLPGETRLFAWADPTGIR-KLTWNYAANF 156  

                   te<-*
                   +e   
   mKIAA3021   157 GE    158  

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