hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08136/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3018  ( 732 res)   mbg08136

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                    112.5    4.9e-29   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/2     154   251 ..     1    82 []    53.5  2.7e-11
PH         2/2     350   445 ..     1    82 []    59.5  4.2e-13

Alignments of top-scoring domains:
PH: domain 1 of 2, from 154 to 251: score 53.5, E = 2.7e-11
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk...kpkgsipLsg
                        ++ +Ll+k+++++w+k  +v+++  Ll+yks++++ p++++pL+g
   mKIAA3018   154    AKICAFLLRKKrFgQWTKLLCVIKDTKLLCYKSSkdqQPQMELPLQG 200  

                   csvre.p........cFeivt.dr.tlllqAeseeereeWvealqsaiak
                   cs++  p++++++++ ++i+ ++ + l+l+   +e++e+W++ +++a ++
   mKIAA3018   201 CSITYiPrdskkkkhELKITQqGTdPLVLAVQGKEQAEQWLKVIKEAYSD 250  

                   a<-*
                   +   
   mKIAA3018   251 C    251  

PH: domain 2 of 2, from 350 to 445: score 59.5, E = 4.2e-13
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk....kpkgsipLsg
                      v  +G+L ++s+++w++r+++++++ L+++k++ + +++  sipL+g
   mKIAA3018   350    VPTCGYLNVLSNsRWRERWCRVKDSKLILHKDRadlkTHLVSIPLRG 396  

                   csvre.p......cFeivt.dr.tlllqAeseeereeWvealqsaiaka<
                   c+v ++ +++++ +F++  +++++ +l A+s+e++ +W+  l + + ++ 
   mKIAA3018   397 CEVIPgLdskhplTFRLLRnGQeVAVLEASSSEDMGRWIGILLAETGSS  445  

                   -*
                     
   mKIAA3018     -    -    

//