hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08136/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3018  ( 732 res)   mbg08136

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       PH domain                                      129.9    4.5e-35   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/2     154   249 ..     1    92 []    60.8  2.9e-14
PH         2/2     350   443 ..     1    92 []    69.4  7.4e-17

Alignments of top-scoring domains:
PH: domain 1 of 2, from 154 to 249: score 60.8, E = 2.9e-14
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk.kkpkgsipLsg
                       +++ +Ll+k ++++w k  +v++++ Ll+yk++k+ +p++ +pL+g
   mKIAA3018   154    AKICAFLLRKKRFGQWTKLLCVIKDTKLLCYKSSKdQQPQMELPLQG 200  

                   iqvekvpdn..krkncFeirt.dretlllqaeseeerkeWvkaiqsair<
                   ++++++p+ ++k+k+ ++i+ ++ + l+l+    e++++W+k i++a + 
   mKIAA3018   201 CSITYIPRDskKKKHELKITQqGTDPLVLAVQGKEQAEQWLKVIKEAYS  249  

                   -*
                     
   mKIAA3018     -    -    

PH: domain 2 of 2, from 350 to 443: score 69.4, E = 7.4e-17
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk..kkpkgsipLs
                      v  +G+L + + +++w++R++ ++++ L+++kd+ + k++  sipL+
   mKIAA3018   350    VPTCGYLNVLS-NSRWRERWCRVKDSKLILHKDRAdlKTHLVSIPLR 395  

                   giqvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<-
                   g++v +  d+k++ +F++  +++e+ +l+a+s+e++ +W+  +  +    
   mKIAA3018   396 GCEVIPGLDSKHPLTFRLLRnGQEVAVLEASSSEDMGRWIGILLAETG   443  

                   *
                    
   mKIAA3018     -   -    

//