hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph00541/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA3016 ( 714 res) mph00541 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- I-set Immunoglobulin I-set domain 193.9 2.5e-54 3 ig Immunoglobulin domain 78.0 2e-19 3 V-set Immunoglobulin V-set domain 31.5 2e-05 2 LRRCT Leucine rich repeat C-terminal domain 18.1 0.2 1 LRR_1 Leucine Rich Repeat 16.8 0.5 1 C2-set_2 CD80-like C2-set immunoglobulin domain 4.1 0.23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_1 1/1 19 42 .. 1 25 [] 16.8 0.5 LRRCT 1/1 77 102 .. 1 26 [] 18.1 0.2 ig 1/3 121 180 .. 1 65 [] 14.9 1.7 I-set 1/3 107 197 .. 1 97 [] 11.9 0.0013 ig 2/3 214 275 .. 1 65 [] 24.7 0.0021 I-set 2/3 200 291 .. 1 97 [] 107.3 3e-28 V-set 1/2 198 291 .. 1 130 [] 16.1 0.015 ig 3/3 308 366 .. 1 65 [] 38.3 1.7e-07 C2-set_2 1/1 295 375 .. 1 101 [] 4.1 0.23 I-set 3/3 294 382 .. 1 97 [] 74.7 2e-18 V-set 2/2 294 382 .. 1 130 [] 15.4 0.018 Alignments of top-scoring domains: LRR_1: domain 1 of 1, from 19 to 42: score 16.8, E = 0.5 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +Le+LdLsg N + sl++++++ ++ mKIAA3016 19 TLEHLDLSG-N-AIM-SLQSNaFsQMK 42 LRRCT: domain 1 of 1, from 77 to 102: score 18.1, E = 0.2 *->dlrCasPeslrGqplldlppsdfsCp<-* ++ Ca+P l+G++++++ p+ f+C+ mKIAA3016 77 NASCAHPQLLKGRSIFTVSPDGFVCD 102 ig: domain 1 of 3, from 121 to 180: score 14.9, E = 1.7 *->GesvtLtCsvsgfgppdvtvtWlrngk.ltgvlvtssenngdstyqt G++v++tCs+ ++++++ t+ W++++ l++ + + + + mKIAA3016 121 GSDVSFTCSAASSSDSPMTFAWKKDNEaLQDAEMENYAHLRAQGGEL 167 sLtitnvtpeDggtYtCvv<-* ++ +g Y Cv mKIAA3016 168 ------MEFTSEGKYQCVI 180 I-set: domain 1 of 3, from 107 to 197: score 11.9, E = 0.0013 *->PkFtqkpkdveVqeGesarfeCkVtGt..PePtVsWfKdGqplssvl P++t +p+ + + G++++f+C + +++ + t W+Kd++ l+ mKIAA3016 107 PQITVQPETQSAIKGSDVSFTCSAASSsdSPMTFAWKKDNEALQD-A 152 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGea.easaeL + + ++ g L+ + +GkY Cv +N +G++ +++a+L mKIAA3016 153 EMENYAHLRAQG----GELM----EFTSEGKYQCVISNHFGSSySVKAKL 194 tVq<-* t+ mKIAA3016 195 TIN 197 ig: domain 2 of 3, from 214 to 275: score 24.7, E = 0.0021 *->GesvtLtCsvsgfgppdvtvtWlrngk..lt.gvlvtssenngdsty G +++L C + g+p +++ W+++g+++ + + + +++ d + mKIAA3016 214 GAMARLECAA--VGHPAPQIAWQKDGGtdFPaARERRMHVMPEDDV- 257 qtsLtitnvtpeDggtYtCvv<-* + i +v+ eD g+Y+C++ mKIAA3016 258 ---FFIVDVKIEDIGVYSCTA 275 I-set: domain 2 of 3, from 200 to 291: score 107.3, E = 3e-28 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P+Ft+ p d++++ G ar+eC + G+P P++ W Kd+G + ++ + mKIAA3016 200 PSFTKTPMDLTIRAGAMARLECAAVGHPAPQIAWQKDgGTDFPA--A 244 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV +++r++v ++ ++I +v+++D G+Y+C+A+NsaG+++a a+LtV mKIAA3016 245 RERRMHVMPED----DVFFIVDVKIEDIGVYSCTAQNSAGSVSANATLTV 290 q<-* mKIAA3016 291 L 291 V-set: domain 1 of 2, from 198 to 291: score 16.1, E = 0.015 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +++ +++p +t G++++L C + + mKIAA3016 198 MLPSFTKTPM----------DLTIRAGAMARLECAAV---GHP---- 227 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg ++ ++ W +++++ + +e++ +v+++ + mKIAA3016 228 AP-QIAWQKDgGTD-------------FPAARERRMHVMPEDDV------ 257 npskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* I +++ +D G+Y C ++ ++ +LtVl mKIAA3016 258 --------FFIVDVKIEDIGVYSCTaqnsagsvSANATLTVL 291 ig: domain 3 of 3, from 308 to 366: score 38.3, E = 1.7e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge++ L+C + +g+p+++++W++++ +l +++ + n mKIAA3016 308 GETAVLQCIA--GGSPPPRLNWTKDDSpLVvTERHFFAAGNQL---- 348 tsLtitnvtpeDggtYtCvv<-* L i + + +D+g YtC+ mKIAA3016 349 --LIIVDSDVSDAGKYTCEM 366 C2-set_2: domain 1 of 1, from 295 to 375: score 4.1, E = 0.23 *->peIeppa.sllegeksenlevvatCvlpysagGkPapritWyldgke ++ p + +++ + ++ v++C+ agG P+pr+ W +d+ + mKIAA3016 295 SFLRPLLdRTVTKG----ETAVLQCI----AGGSPPPRLNWTKDDSP 333 lvpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsyga l +t+ + ++++l + + +s + + tC+ s+ + mKIAA3016 334 L-------VVTERHFFAAGNQLLII---VDSDVS---DAGKYTCEMSNTL 370 lrgsk<-* + ++ mKIAA3016 371 GTERG 375 I-set: domain 3 of 3, from 294 to 382: score 74.7, E = 2e-18 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F++++ d +V+ Ge+a+++C + G+P+P W+Kd++pl + mKIAA3016 294 PSFLRPLLDRTVTKGETAVLQCIAGGSPPPRLNWTKDDSPLVV---- 336 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq ++r+ + + + + L+I + + +D+GkYtC +N G+ ++L V mKIAA3016 337 TERHFFAAGN----QLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSVI 382 <-* mKIAA3016 - - V-set: domain 2 of 2, from 294 to 382: score 15.4, E = 0.018 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +s + + +r tv G+++ L+C +++ mKIAA3016 294 PSFLRPLLDR------------TVTKGETAVLQCIAG---GSP---- 321 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + +++W + + +p ++ ++ +gn mKIAA3016 322 PP-RLNWTK----DDSPLVVT--------------------ERHFFAAGN 346 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* L I + +sD G Y+C +++ +++ g +rL V mKIAA3016 347 QL-----LIIVDSDVSDAGKYTCEmsntlgteRGNVRLSVI 382 //