hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08774/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3014  ( 1304 res)   mbg08774

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 27.8     0.0015   1
LRR_CC   Leucine-rich repeat - CC (cysteine-containin    25.9     0.0056   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1     629   691 ..     1    39 []    27.8   0.0015
LRR_CC     1/5    1116  1138 ..     1    26 []     5.3  1.5e+02
LRR_CC     2/5    1140  1165 ..     1    26 []     2.6  3.4e+02
LRR_CC     3/5    1180  1204 ..     1    26 []     3.8  2.3e+02
LRR_CC     4/5    1205  1230 ..     1    26 []    13.7       13
LRR_CC     5/5    1260  1285 ..     1    26 []     9.4       45

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 629 to 691: score 27.8, E = 0.0015
                   *->yC.vCgk...............g.llqCdkgCdrwyHv.Clgpple.
                      +C vCg+ +++++ ++++++ +  l+ C+  C+   H++Cl++++++
   mKIAA3014   629    VClVCGEagkedtveeeegkfnLmLMECS-ICNEIIHPgCLKIKESe 674  

                   .....epdg.wyCprCk<-*
                   +  ++e +  w Cp+C    
   mKIAA3014   675 gvvndELPNcWECPKCN    691  

LRR_CC: domain 1 of 5, from 1116 to 1138: score 5.3, E = 1.5e+02
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                       p L+ L LsgCs    +++ aL+++   
   mKIAA3014  1116    LPGLRDLVLSGCS---WIAVSALCSS    1138 

LRR_CC: domain 2 of 5, from 1140 to 1165: score 2.6, E = 3.4e+02
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      Cp L++Ld+ + + + D  ++ L +    
   mKIAA3014  1140    CPLLRTLDVQWVEGLKDAQMRDLLSP    1165 

LRR_CC: domain 3 of 5, from 1180 to 1204: score 3.8, E = 2.3e+02
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                       +n+ eL L g   iTD++l+ + +    
   mKIAA3014  1180    LRNIVELRLAGLD-ITDVSLRLIIRH    1204 

LRR_CC: domain 4 of 5, from 1205 to 1230: score 13.7, E = 13
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      +p L +L Ls+C +i D++++ L+     
   mKIAA3014  1205    MPLLSKLQLSYCNHINDQSINLLTAV    1230 

LRR_CC: domain 5 of 5, from 1260 to 1285: score 9.4, E = 45
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C n+ ++dL++C ++T eg+  +      
   mKIAA3014  1260    CGNICHIDLRYCKQVTKEGCEQFIAE    1285 

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