hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08774/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3014  ( 1304 res)   mbg08774

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-CXXC  CXXC zinc finger                                84.9    1.7e-21   1
F-box    F-box domain                                    34.6    2.3e-06   1
JmjC     JmjC domain                                     22.7    0.00014   1
PHD      PHD-finger                                       1.1       0.23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjC       1/1     193   293 ..     1   126 []    22.7  0.00014
zf-CXXC    1/1     573   619 ..     1    49 []    84.9  1.7e-21
PHD        1/1     629   693 ..     1    51 []     1.1     0.23
F-box      1/1    1020  1075 ..     1    44 []    34.6  2.3e-06

Alignments of top-scoring domains:
JmjC: domain 1 of 1, from 193 to 293: score 22.7, E = 0.00014
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkv.WYaiPpeyaekfe
                      ++ + ++++ t++Hi+  g++ ++y++f++ k+ W++ P+++   + 
   mKIAA3014   193    YCLMSVKGCFTDFHIDFGGTS-VWYHVFRGGKIfWLIPPTLHNLALY 238  

                   klhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfv
                          +++    l +g+q+d    +l + + +++           r+ 
   mKIAA3014   239 -------EEWV---L-SGKQSDI---FLGDRVERCQ-----------RIE 263  

                   QkpGEfVftfPgayHqvfNlGfniaeavNF<-*
                    k+G + f+++g++H+v +  +++ +  N+   
   mKIAA3014   264 LKQGYTFFIPSGWIHAVYTPVDSLVFGGNI    293  

zf-CXXC: domain 1 of 1, from 573 to 619: score 84.9, E = 1.7e-21
                   *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR
                       ++r+r+rC++Ce+C+r+ +CG+C++C+d++kFGGpgr+kQ +Ci+R
   mKIAA3014   573    GARRRRTRCRKCEACLRT-ECGECHFCKDMKKFGGPGRMKQ-SCIMR 617  

                   RC<-*
                   +C   
   mKIAA3014   618 QC    619  

PHD: domain 1 of 1, from 629 to 693: score 1.1, E = 0.23
                   *->yCsvCgkpddd.........aggdllqCDgCdrwfHlaClgpple..
                       C vCg+ + +++ ++++++    l+ C  C++  H+ Cl+++++++
   mKIAA3014   629    VCLVCGEAGKEdtveeeegkFNLMLMECSICNEIIHPGCLKIKESeg 675  

                   ...eppegkWlCpeCtpk<-*
                     +++ +  W Cp+C  +   
   mKIAA3014   676 vvnDELPNCWECPKCNHA    693  

F-box: domain 1 of 1, from 1020 to 1075: score 34.6, E = 2.3e-06
                   *->lldLPde..........llleIlsrLdpkdllrlslVSkrwrslvds
                       ++LP++++  +  +++++  ++s+L+ +dl+++++V+++w++ + +
   mKIAA3014  1020    PDSLPLDdgaahvmhreVWMAVFSYLSHRDLCVCMRVCRTWNRWCCD 1066 

                   l.lwf.kll<-*
                   ++lw ++ l   
   mKIAA3014  1067 KrLWTrIDL    1075 

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