hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mph/mph02039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3012  ( 253 res)   mph02039

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
small_GTP small_GTP: small GTP-binding protein domain   122.7    6.7e-33   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
small_GTP   1/1      57   218 ..     1   186 []   122.7  6.7e-33

Alignments of top-scoring domains:
small_GTP: domain 1 of 1, from 57 to 218: score 122.7, E = 6.7e-33
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptdgttrdyvtes
                      ++ +k++++Gd +vGks+ll r+++++    ++ +  +++ d+  + 
   mKIAA3012    57    DYLFKLLLIGDSGVGKSCLLLRFADDT-YTESYIS--TIGVDFKIRT 100  

                   ieedgktitgatfqWgykfnllDtpGlhrqedydalrrlyypevlsslev
                   ie+dgkt         +k++ +Dt+G   qe+++ +++ yy+++ +++ v
   mKIAA3012   101 IELDGKT---------IKLQRWDTAG---QERFRTITSSYYRGAHGIIVV 138  

                   ldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekpgyfv
                   +d++   +++++++  +++ei ++a  ++v  llvgnk+dl + k     
   mKIAA3012   139 YDVTDQ-ESFNNVK-QWLQEIDRYAS-ENVNKLLVGNKCDLTTKK----- 180  

                   dlkphlaslfaklngephfiplsaetgkgidslfglvea<-*
                    +++ +a++fa + g p f+++sa++ ++++  f ++ a   
   mKIAA3012   181 VVDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAA    218  

//