hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph02039/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA3012 ( 253 res) mph02039 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RAB Rab subfamily of small GTPases 360.6 9.6e-104 1 RAS Ras subfamily of RAS small GTPases 130.9 1.3e-34 1 RHO Rho (Ras homology) subfamily of Ras-like sma 59.1 5.1e-14 1 RAN Ran (Ras-related nuclear proteins) /TC4 subf 27.2 2.2e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RHO 1/1 62 221 .. 1 180 [] 59.1 5.1e-14 RAS 1/1 57 223 .. 1 167 [] 130.9 1.3e-34 RAB 1/1 60 223 .. 1 172 [] 360.6 9.6e-104 RAN 1/1 65 253 .] 1 202 [] 27.2 2.2e-05 Alignments of top-scoring domains: RHO: domain 1 of 1, from 62 to 221: score 59.1, E = 5.1e-14 *->lVvVGDGaVGKTCLLisYTtnaFPedYVPTVFENY.sadvevpDgkp l ++GD++VGK CLL +++ +++ e Y+ T+ +++ ++e Dgk+ mKIAA3012 62 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFkIRTIEL-DGKT 107 vnLgLWDTAGQEdYDRLRPLSYPqtDVfLiCFSVdspaSfeNVkeKWyPE ++L+ WDTAGQE + + + Y +++ +++ ++V+ ++Sf+NVk W+ E mKIAA3012 108 IKLQRWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQE 156 vkhfc.PnvPiiLVGtKlDLRnDedtleelsekkqePvtteqGeanskia + +++ nv +LVG+K+DL +++ + + k+ mKIAA3012 157 IDRYAsENVNKLLVGNKCDLT--TKKVVDYTTAKE--------------- 189 lAkeIGAvkYlECSAltqeGvkeVFeeAiraaLnk<-* A+++G +lE+SA+ ++v++ F ++aa k mKIAA3012 190 FADSLGI-PFLETSAKNATNVEQSFM--TMAAEIK 221 RAS: domain 1 of 1, from 57 to 223: score 130.9, E = 1.3e-34 *->mreYKlVVlGgGGVGKSALTiQFiqghFvdeYDPTIE.DSYRKqiei +Kl G+ GVGKS+L ++F ++ ++Y TI D+ + ie mKIAA3012 57 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGvDFKIRTIEL 103 DgevalLDILDTAGQeEFsAMRdqYmRtGeGFlLVYSitsrqSFeeikkf Dg++ +L+ DTAGQe F Y R G + VY +t+++SF+ +k+ mKIAA3012 104 DGKTIKLQRWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 153 reqIlRVKdrddvPivLVGNKcDLeneRqVsteEGkeLAkqlncpFlEtS + I R + +++v +LVGNKcDL ++ +V + +ke A++l++pFlEtS mKIAA3012 154 LQEIDR-YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 202 AKerinVdeaFydLVReirks<-* AK+ +nV++ F + +ei+k+ mKIAA3012 203 AKNATNVEQSFMTMAAEIKKR 223 RAB: domain 1 of 1, from 60 to 223: score 360.6, E = 9.6e-104 *->FKiilIGDSGVGKSsLLsRFtddkFsedsksTIGVDFktktievdGk FK++lIGDSGVGKS+LL+RF+dd++ e+++sTIGVDFk++tie+dGk mKIAA3012 60 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 106 rvKLQIWDTAGQERFRSiTssYYRGAvGalLVYDiTnreSFenlknWlke ++KLQ WDTAGQERFR+iTssYYRGA+G+++VYD+T+ eSF+n+k+Wl e mKIAA3012 107 TIKLQRWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 156 lreyadpppenvvimLVGNKsDLeeqRqVstEeaekficDcAeehgllFi +++ya++ nv ++LVGNK+DL + +V++ a++f A+ +g++F+ mKIAA3012 157 IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEF----ADSLGIPFL 199 fETSAKtntNVeeAFeelakkIlkr<-* ETSAK++tNVe++F+++a +I+kr mKIAA3012 200 -ETSAKNATNVEQSFMTMAAEIKKR 223 RAN: domain 1 of 1, from 65 to 253: score 27.2, E = 2.2e-05 *->vGDGGtGKttFvKRHLtGEFEKKYvatlGvEvHPLvFftnrGkirFn +GD G GK R + Y++t+Gv+ i+ mKIAA3012 65 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 111 vWDtAGqEKFGGLRDGYYiqgqCAiimFDvtaRvtYKnvPnWHRDLvRvC WDtAGqE+F + YY + i+++Dvt + nv +W ++ R mKIAA3012 112 RWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 161 .EniPivLCGnKvDvKdRkvKAKqit..FHRKKnLqYYdisAKsnYnFEK +En+ L GnK D+ +kv + ++F + + + sAK n E+ mKIAA3012 162 sENVNKLLVGNKCDLTTKKVVDYTTAkeFADSLGIPFLETSAKNATNVEQ 211 PFLyLARKLlGDpnLeFvamPALAPPEvqlDi.AlaakyEkDLeaAaaaa F+ +A A ++ ++A a Ek + ++ mKIAA3012 212 SFMTMA-----------------AEIKKRMGPgATAGGAEKSNVKIQSTP 244 LPDddDDdl<-* + mKIAA3012 245 VKQSGGGCC 253 //