hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01327/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3011  ( 496 res)   mph01327

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          90.1    4.3e-23   4
KRAB     KRAB box                                        44.5    2.4e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1     147   186 ..     1    41 []    44.5  2.4e-09
zf-C2H2    1/4     317   339 ..     1    24 []    30.7  3.3e-05
zf-C2H2    2/4     370   392 ..     1    24 []    10.3       10
zf-C2H2    3/4     428   450 ..     1    24 []    36.4  6.3e-07
zf-C2H2    4/4     456   478 ..     1    24 []    33.2  5.8e-06

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 147 to 186: score 44.5, E = 2.4e-09
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                       ++e   V+F+++EW+ L  +Q++LYr+VM  Ny++LvSl    
   mKIAA3011   147    -SLENDGVCFSEQEWENLEDWQKELYRNVMESNYETLVSLK    186  

zf-C2H2: domain 1 of 4, from 317 to 339: score 30.7, E = 3.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykCp +C+ sF+ k +L++Hl++H   
   mKIAA3011   317    YKCP-ECQISFRYKQQLTAHLQSH    339  

zf-C2H2: domain 2 of 4, from 370 to 392: score 10.3, E = 10
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C++sFs k +L +H+r H   
   mKIAA3011   370    HQCD-VCHRSFSCKVSLVTHQRCH    392  

zf-C2H2: domain 3 of 4, from 428 to 450: score 36.4, E = 6.3e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C  +CgksFs++s+L rH+r+H   
   mKIAA3011   428    LICG-YCGKSFSHPSDLVRHQRIH    450  

zf-C2H2: domain 4 of 4, from 456 to 478: score 33.2, E = 5.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C ksF +k +L +H+++H   
   mKIAA3011   456    YSCP-ECEKSFVQKQHLLQHQKIH    478  

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