hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05721/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3006  ( 617 res)   mbg05721

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    295.4    4.2e-84  15
KRAB     krueppel associated box                         66.0    4.7e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1       6    63 ..     1    62 []    66.0  4.7e-15
ZnF_C2H2   1/15    195   217 ..     1    23 []    24.7    0.013
ZnF_C2H2   2/15    223   245 ..     1    23 []    24.6    0.014
ZnF_C2H2   3/15    251   273 ..     1    23 []    26.6   0.0034
ZnF_C2H2   4/15    279   301 ..     1    23 []    25.3   0.0084
ZnF_C2H2   5/15    307   329 ..     1    23 []    23.0    0.041
ZnF_C2H2   6/15    335   357 ..     1    23 []    24.9    0.011
ZnF_C2H2   7/15    363   385 ..     1    23 []    26.4   0.0039
ZnF_C2H2   8/15    391   413 ..     1    23 []    29.1  0.00061
ZnF_C2H2   9/15    419   441 ..     1    23 []    33.6  2.7e-05
ZnF_C2H2  10/15    447   469 ..     1    23 []    26.9   0.0027
ZnF_C2H2  11/15    475   497 ..     1    23 []    21.5     0.12
ZnF_C2H2  12/15    503   525 ..     1    23 []    30.8  0.00019
ZnF_C2H2  13/15    531   553 ..     1    23 []    28.2   0.0011
ZnF_C2H2  14/15    559   581 ..     1    23 []    22.3    0.068
ZnF_C2H2  15/15    587   609 ..     1    23 []    19.1     0.63

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 6 to 63: score 66.0, E = 4.7e-15
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      V+FeDVAV Fs EEW  L p+Q+nLY+dVM+E+ +nL+S G  ++  
   mKIAA3006     6    VAFEDVAVNFSLEEWAMLNPSQKNLYKDVMQETLRNLASIG-SSLE- 50   

                   pdliskLEqgeEpwi<-*
                   +  i    +    w    
   mKIAA3006    51 HHIIENIYRNS--WK    63   

ZnF_C2H2: domain 1 of 15, from 195 to 217: score 24.7, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk+fss + ++rH r+H   
   mKIAA3006   195    FECKQ-CGKCFSSSrYFRRHERRH    217  

ZnF_C2H2: domain 2 of 15, from 223 to 245: score 24.6, E = 0.014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f  ++ L+ H r+H   
   mKIAA3006   223    YICKQ-CGKAFAFPtYLQTHERIH    245  

ZnF_C2H2: domain 3 of 15, from 251 to 273: score 26.6, E = 0.0034
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk+f + ++Lk H r+H   
   mKIAA3006   251    YVCLQ-CGKTFAHSrSLKTHKRTH    273  

ZnF_C2H2: domain 4 of 15, from 279 to 301: score 25.3, E = 0.0084
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk+ +++++L+ H r+H   
   mKIAA3006   279    FVCNY-CGKTLRHYsSLQIHTRIH    301  

ZnF_C2H2: domain 5 of 15, from 307 to 329: score 23.0, E = 0.041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk f ++++++ H r+H   
   mKIAA3006   307    YVCKP-CGKAFITYrSFRIHERIH    329  

ZnF_C2H2: domain 6 of 15, from 335 to 357: score 24.9, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg +f ++ +L++H  +H   
   mKIAA3006   335    YECKQ-CGNTFMRWiQLRKHEIIH    357  

ZnF_C2H2: domain 7 of 15, from 363 to 385: score 26.4, E = 0.0039
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgksf+  ++L+ H r+H   
   mKIAA3006   363    YACKL-CGKSFTCSgSLRTHERIH    385  

ZnF_C2H2: domain 8 of 15, from 391 to 413: score 29.1, E = 0.00061
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+sf++ ++L rH  +H   
   mKIAA3006   391    YVCDQ-CGYSFTRLnSLLRHKITH    413  

ZnF_C2H2: domain 9 of 15, from 419 to 441: score 33.6, E = 2.7e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f++  +L+rH+++H   
   mKIAA3006   419    YVCNH-CGKTFPRSaSLQRHVKIH    441  

	[output cut off at A = 10 top alignments]
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