hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg05721/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA3006 ( 617 res) mbg05721 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 343.1 3e-99 15 KRAB KRAB box 90.5 3.4e-23 1 GATA GATA zinc finger 3.8 0.9 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/1 6 46 .. 1 41 [] 90.5 3.4e-23 zf-C2H2 1/15 195 217 .. 1 24 [] 28.4 0.00016 zf-C2H2 2/15 223 245 .. 1 24 [] 30.5 4e-05 zf-C2H2 3/15 251 273 .. 1 24 [] 31.7 1.7e-05 zf-C2H2 4/15 279 301 .. 1 24 [] 29.0 0.00011 zf-C2H2 5/15 307 329 .. 1 24 [] 22.5 0.01 zf-C2H2 6/15 335 357 .. 1 24 [] 27.1 0.00042 zf-C2H2 7/15 363 385 .. 1 24 [] 25.8 0.001 zf-C2H2 8/15 391 413 .. 1 24 [] 31.9 1.5e-05 zf-C2H2 9/15 419 441 .. 1 24 [] 37.8 2.5e-07 GATA 1/1 421 462 .. 1 36 [] 3.8 0.9 zf-C2H2 10/15 447 469 .. 1 24 [] 26.8 0.00052 zf-C2H2 11/15 475 497 .. 1 24 [] 24.9 0.0018 zf-C2H2 12/15 503 525 .. 1 24 [] 34.8 2e-06 zf-C2H2 13/15 531 553 .. 1 24 [] 32.1 1.2e-05 zf-C2H2 14/15 559 581 .. 1 24 [] 26.2 0.00077 zf-C2H2 15/15 587 609 .. 1 24 [] 23.8 0.0039 Alignments of top-scoring domains: KRAB: domain 1 of 1, from 6 to 46: score 90.5, E = 3.4e-23 *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-* V+FeDVAV+F+ EEW+ L+p+Q+nLY+dVM+E+ rnL+S+g mKIAA3006 6 VAFEDVAVNFSLEEWAMLNPSQKNLYKDVMQETLRNLASIG 46 zf-C2H2: domain 1 of 15, from 195 to 217: score 28.4, E = 0.00016 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs++ ++rH r+H mKIAA3006 195 FECK-QCGKCFSSSRYFRRHERRH 217 zf-C2H2: domain 2 of 15, from 223 to 245: score 30.5, E = 4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F + L++H r+H mKIAA3006 223 YICK-QCGKAFAFPTYLQTHERIH 245 zf-C2H2: domain 3 of 15, from 251 to 273: score 31.7, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F ++ +Lk+H+rtH mKIAA3006 251 YVCL-QCGKTFAHSRSLKTHKRTH 273 zf-C2H2: domain 4 of 15, from 279 to 301: score 29.0, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+ ++ s+L+ H r+H mKIAA3006 279 FVCN-YCGKTLRHYSSLQIHTRIH 301 zf-C2H2: domain 5 of 15, from 307 to 329: score 22.5, E = 0.01 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F + +++ H r+H mKIAA3006 307 YVCK-PCGKAFITYRSFRIHERIH 329 zf-C2H2: domain 6 of 15, from 335 to 357: score 27.1, E = 0.00042 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F r+ +L++H +H mKIAA3006 335 YECK-QCGNTFMRWIQLRKHEIIH 357 zf-C2H2: domain 7 of 15, from 363 to 385: score 25.8, E = 0.001 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ CgksF+ +++L++H r+H mKIAA3006 363 YACK-LCGKSFTCSGSLRTHERIH 385 zf-C2H2: domain 8 of 15, from 391 to 413: score 31.9, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sF+r +L rH+ tH mKIAA3006 391 YVCD-QCGYSFTRLNSLLRHKITH 413 zf-C2H2: domain 9 of 15, from 419 to 441: score 37.8, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F r+++L+rH ++H mKIAA3006 419 YVCN-HCGKTFPRSASLQRHVKIH 441 GATA: domain 1 of 1, from 421 to 462: score 3.8, E = 0.9 *->CsnCgttk...TplWRrgp....dGnrtLCNACGLyykkhgvk<-* C +Cg t +++ +l R+ +++++++ +C CG+ + + + mKIAA3006 421 CNHCGKTFprsASLQRHVKihteEKPY-VCKQCGVAFPSSADL 462 zf-C2H2: domain 10 of 15, from 447 to 469: score 26.8, E = 0.00052 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg +F ++++L H +tH mKIAA3006 447 YVCK-QCGVAFPSSADLLEHEQTH 469 zf-C2H2: domain 11 of 15, from 475 to 497: score 24.9, E = 0.0018 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg +F +s++++H+ H mKIAA3006 475 YICE-QCGNAFVLWSQFQKHKALH 497 zf-C2H2: domain 12 of 15, from 503 to 525: score 34.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF+++ +Lk+H r+H mKIAA3006 503 YVCK-QCGKSFTSSRSLKTHERIH 525 zf-C2H2: domain 13 of 15, from 531 to 553: score 32.1, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +++L+rH +tH mKIAA3006 531 YECK-QCGKTFLWSYSLQRHEKTH 553 zf-C2H2: domain 14 of 15, from 559 to 581: score 26.2, E = 0.00077 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++F s+L+ H + H mKIAA3006 559 HVCK-QCGETFPYDSHLQVHEKLH 581 zf-C2H2: domain 15 of 15, from 587 to 609: score 23.8, E = 0.0039 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk F + +L+rH H mKIAA3006 587 FNCK-YCGKPFFTLNHLHRHELLH 609 //