hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08806/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA3005  ( 1833 res)   mbg08806

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MYSc     Myosin. Large ATPases.                        1081.3          0   1
IQ       Short calmodulin-binding motif containing co    28.1     0.0012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1       1   641 [.     1   771 []  1081.3        0
IQ         1/1     642   664 ..     1    23 []    28.1   0.0012

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 1 to 641: score 1081.3, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                                                                     
   mKIAA3005     -    ----------------------------------------------- -    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                                            Gk+r+E+pPH++Ai+++AYr+Ml++
   mKIAA3005     1 -------------------------GKKRHEMPPHIYAISESAYRCMLQD 25   

                   keNQsIiISGESGAGKTEatKkimqYLAavsg.........svesvedqi
                   +e+QsI+++GESGAGKTE+tKk++qYLA+v+++++++++++  + +e q+
   mKIAA3005    26 REDQSILCTGESGAGKTENTKKVIQYLAHVASshkgrkdhnIPGELERQL 75   

                   LesNPiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEK
                   L++NPiLE+FGNAKTv+N+NSSRFGKfi+I+Fd +G ivGA+Ie+YLLEK
   mKIAA3005    76 LQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEK 125  

                   SRVVsQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqgg
                   SR V+Qak+ER +HIFYQLL+Ga e lk+ l+L+    +  +Y++L++g 
   mKIAA3005   126 SRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLE----GFNNYRFLSNG- 170  

                   tpfankryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFr
                               + ++g  D+++F+eT+E    Am+++Gfs+eE+ s+++
   mKIAA3005   171 -----------YIPIPGQQDKDNFQETME----AMHIMGFSHEEILSMLK 205  

                   ilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeL
                   +++++L  GNi+F+++rn   ++a+     +  +++qk+++LLg ++ e+
   mKIAA3005   206 VVSSVLQFGNISFKKERN--TDQAS----MPENTVAQKLCHLLGMNVMEF 249  

                   ekaLtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkr
                    +a+++++ik+g++   ++ k++++eqA +a+ ALAKa Y+RLF WLV+r
   mKIAA3005   250 TRAILTPRIKVGRD---YVQKAQTKEQADFAVEALAKATYERLFRWLVHR 296  

                   INksl......sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnq
                   INk+l++++++ a+fIG+LDI+GFEiFe NSFEQ+CINy+NEKLQQ+Fn+
   mKIAA3005   297 INKALdrtkrqGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNH 346  

                   hvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDE
                    +F lEQEEY+rEGIeW fIdF+l D+QpciDLIE ++ +P+G+l+lLDE
   mKIAA3005   347 TMFILEQEEYQREGIEWNFIDFGL-DLQPCIDLIERPA-NPPGVLALLDE 394  

                   eClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrf
                   eC+f   Pk+TD+tF+eKL      q  ++h++f+kpr           +
   mKIAA3005   395 ECWF---PKATDKTFVEKL-----VQEQGSHSKFQKPRQ---------LK 427  

                   grtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFp
                   ++++F i HYAG+V+Y ++ +L KN+D+L++++  Ll++S+++++a+L++
   mKIAA3005   428 DKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWK 477  

                   eeadqsssaakekssggagksrkagr.r.epskgtisskkrppTvGsqFk
                   ++    +         g+++ ++ ++  ++        k++++TvG+++k
   mKIAA3005   478 DVDRIVGLDQV----TGMTETAFGSAyKtK--------KGMFRTVGQLYK 515  

                   .sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEni
                   +sL +Lm+tL++tnP+F+RCI+PN+eK++g+ d++lVl+QLr++GvLE+i
   mKIAA3005   516 eSLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGI 565  

                   RIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkaceal
                   RI+r GFP+R+ f+eF+qRY+ +l ++  p+g       f+d k+ace +
   mKIAA3005   566 RICRQGFPNRIVFQEFRQRYE-ILTPNAIPKG-------FMDGKQACERM 607  

                   LqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                   + +l+       ld++ y+iG +K+F+R +g+la+LEe+R+    
   mKIAA3005   608 IRALE-------LDPNLYRIGQSKIFFR-AGVLAHLEEERDL    641  

IQ: domain 1 of 1, from 642 to 664: score 28.1, E = 0.0012
                   *->rleraAiiIQaawRGylaRkryk<-*
                      +++ ++i++Qa +RGylaRk +    
   mKIAA3005   642    KITDIIIFFQAVCRGYLARKAFA    664  

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