hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg08806/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA3005 ( 1833 res) mbg08806 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Myosin_head Myosin head (motor domain) 1171.3 0 1 Myosin_tail_1 Myosin tail 778.3 3e-230 1 IQ IQ calmodulin-binding motif 26.7 0.00055 1 Apolipoprotein Apolipoprotein A1/A4/E family -106.6 0.85 1 Filament Intermediate filament protein -188.0 0.54 1 DUF812 Protein of unknown function (DUF812) -267.2 0.51 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Myosin_head 1/1 1 628 [. 1 795 [] 1171.3 0 IQ 1/1 644 664 .. 1 21 [] 26.7 0.00055 DUF812 1/1 516 1017 .. 1 655 [] -267.2 0.51 Filament 1/1 761 1073 .. 1 359 [] -188.0 0.54 Apolipoprotein 1/1 939 1175 .. 1 277 [] -106.6 0.85 Myosin_tail_1 1/1 930 1787 .. 1 863 [] 778.3 3e-230 Alignments of top-scoring domains: Myosin_head: domain 1 of 1, from 1 to 628: score 1171.3, E = 0 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp mKIAA3005 - ----------------------------------------------- - iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA Gk+r+E+pPHi+Ai+++AYR Ml+d+e+QsIl++GESGA mKIAA3005 1 -----------GKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGESGA 39 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqiLqsNPiLEA GKTEntKkv+qYlA v++s+++ + + ++ g+le q+Lq+NPiLE+ mKIAA3005 40 GKTENTKKVIQYLAHVASSHKGRK-----DHNIPGELERQLLQANPILES 84 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT++N+NSSRFGKfi+I+Fd tG i vG++IetYLLEKSR v+ mKIAA3005 85 FGNAKTVKNDNSSRFGKFIRINFDVTGYI----VGANIETYLLEKSRAVR 130 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+++ER+FHIFYQLL+ga + + k +L+L+ + ++Y++L++ g + mKIAA3005 131 QAKDERTFHIFYQLLSGAGEHL-KSDLLLE---GFNNYRFLSN-G----Y 171 ytvyrrDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNie ++ +g D ++F++t +A+ i+Gf++ee++s++++++++L+ GNi mKIAA3005 172 IPI----PGQQDKDNFQETMEAMHIMGFSHEEILSMLKVVSSVLQFGNIS 217 GFkqdqatTGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaLlsrri Fk+++ +++qA +++++++ +++ ++LLG ++ e+++a+l++ri mKIAA3005 218 -FKKER----NTDQA---SMPENTV-AQKLCHLLGMNVMEFTRAILTPRI 258 ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsa k+G r++v+k+q++eqA +a++ALAKa Y+RLF W+V +iNkaL+ mKIAA3005 259 KVG-----RDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDR 303 keQasdSrGGqaaegdDTVSITVVdlPraaldkranfIGvLDIyGFEIFa ++ + + a+fIG+LDI+GFEIF mKIAA3005 304 TK---R--------------------------QGASFIGILDIAGFEIF- 323 ekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnq e NSFEQLcINY+NEKLQQ+FNh+mF+lEQEEY+rEgIeW fId+glD+q mKIAA3005 324 ELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQ 373 acidLIEkKmkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlth +cidLIE + +PpG+l+lLDEeC+fPkatD+tF++KL+q + h+ + mKIAA3005 374 PCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQ-GSHS---K 419 FaqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlis F qkp r+ ++k+ F+i HYAG+V+Y a+ +l+KN+DpL+d++ + mKIAA3005 420 F-QKP-RQ-----LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVAT 462 llksSsdvpllaeLFpeeelseaAnrrnkapdfeadfdeeeaaaksaklg ll +Ssd +++aeL++++ + ++++ +++ + mKIAA3005 463 LLHQSSD-RFVAELWKDVDR----------------IVGLDQVTGMTETA 495 sgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNek g++ ++kk++f +Tvg ++kesl++Lm+tL++t nP+fvRCI+PN++ mKIAA3005 496 FGSAYKTKKGMF-RTVGQLYKESLTKLMATLRNT---NPNFVRCIIPNHE 541 KkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLap K+ag++D++lVl+Qlrc+GvLE giRi+r+GFPnRi+f+eF+qRY++L+p mKIAA3005 542 KRAGKLDPHLVLDQLRCNGVLE-GIRICRQGFPNRIVFQEFRQRYEILTP 590 ktwpsgfrpkwvgdakkgceliLqslrqtpgnldkeeyrfGkTKiFfR<- +++p+gf +d+k++ce ++ +l +ld+++yr+G++KiFfR mKIAA3005 591 NAIPKGF-----MDGKQACERMIRAL-----ELDPNLYRIGQSKIFFR 628 * mKIAA3005 - - IQ: domain 1 of 1, from 644 to 664: score 26.7, E = 0.00055 *->rraaikIQaawRGylaRkryk<-* ++ +i +Qa++RGylaRk++ mKIAA3005 644 TDIIIFFQAVCRGYLARKAFA 664 DUF812: domain 1 of 1, from 516 to 1017: score -267.2, E = 0.51 *->MeEadrDILmhsLrq.....aGvaipPdvqeLseFTpElvVea..vv e + Lm +Lr ++++ + ip p lv ++ mKIAA3005 516 -ESLTK--LMATLRNtnpnfVRCIIPNHEKRAGKLDPHLVLDQlrCN 559 rcLrvInPdvgsgLSdlLPGdAmseRFRvAs..sLAqackdlGYrldlGY + L I+ + g++ +R+ + +++ + ++ +d G mKIAA3005 560 GVLEGIRICRQ-GFPNRIVFQEFRQRYEILTpnAIPKGFMD-------GK 601 YKEQaFLyPeevdsPLvFLRdL.............LlFLvErLpedaegd +++ +R L+ +++ + +++++ F + L e++ mKIAA3005 602 ---------QACE---RMIRALeldpnlyrigqskIFFRAGVLAHLEEER 639 kDGAskdqtaGdsalLlRaIgselrdQLalPWVPpflrtpkmqkLrgiSa + d+ ++ a+ + ++r +k + Sa mKIAA3005 640 D------LKITDIIIFFQAVCRG-----------YLARKAFAKKQQQLSA 672 LqieFrpdrllvpelkdeeedseiQkselllkaptlvsqksgrsasLles L r + l + + k+ ll++ + +++ Ll+ mKIAA3005 673 LKVLQR-NCAAYLKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELLKV 721 vaaklCqqvnRDrPGDedsvktdsrvpdqedervelQrlhkvLlEeLrqs + + e e e r h +LlEe mKIAA3005 722 KEKQ----------------------TKVEGELEEMERKHQQLLEEKNIL 749 WGlLGAPiqvRDLGElLqelgawaqigpdkgsrFvhSEKFTFHLePqpql a + + F E e + l mKIAA3005 750 -----------------------AEQLQAETELFAEAE------EMRARL 770 iqvvdvPAtsereEeptrAAqeqeLesLreqLeelrvaiEelladkKtlG + ++++E + L L++ +ee l +kK mKIAA3005 771 A--------AKKQELEE------ILHDLESRVEEEEERNQILQNEKKKMQ 806 valvqleqelrksrleimDLKKqWYEqYYiYFiaeieqaLklksrtvell + le +l + q+L l t e mKIAA3005 807 AHIQDLEEQLDEEEGA--------------------RQKLQLEKVTAEAK 836 adGednlaklqlvvkssmasrridLalqwekkrvpLLdelrkLrklkdvr + + l+++ s+ i e+ +e + ++ mKIAA3005 837 IKKMEEEV---LLLEDQ-NSKFIKEKKLMEDR----IAECS----SQLAE 874 ElessrrlaeiqeleqdlrAaaeearrkeevykqlsseLEtlPkdapRka E e ++la+i+ + + ee +kee +q eL mKIAA3005 875 EEEKAKNLAKIRNKQEVMISDLEERLKKEEKTRQ---EL----------- 910 YtrRIkEivgNiRKqkedItkIlsdTreLQkeiNsvsekLdRtFavtDeL + RK++ ++T +LQ +i ++++ +DeL mKIAA3005 911 --------EKAKRKLD-------GETTDLQDQIAELQAQ-------VDEL 938 vfkdaKkDdavrkaYKlLA.....aLHenceqLietIelTgtirrevrdl + Kk a LA+++++ LH n ++ +l mKIAA3005 939 KVQLTKKEEELQGA---LArgddeTLHKN-----NALKVARELQAQIAEL 980 EeqietekakkvLssLek....iqeDlralrqeneeLke<-* e e+eka ek+++++ e l+al+ e e + mKIAA3005 981 QEDFESEKASR--NKAEKqkrdLSEELEALKTELEDTLD 1017 Filament: domain 1 of 1, from 761 to 1073: score -188.0, E = 0.54 *->nEKeqmQnLNDRLAsYIdKVRfLEqqNkeLevkieelrqkqsrggpa E e+m+ RLA K + LE+ ++Le+++ee +++++ mKIAA3005 761 AEAEEMRA---RLAA---KKQELEEILHDLESRVEEEEERNQ----- 796 svsrlyslYeteieeLRrqidqltnerarlqlEidnlrealedfrkKyed +++ + + ++ i++L +q+d+ + +r +lqlE + + + kK e+ mKIAA3005 797 ILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKI----KKMEE 842 KeDLaaQnqlkdlEialntkeaeLaTaL.eRqeaEndlvgLRaQiAklE. E+ l +e + + +e+ +E+ ++ Q+A E+ mKIAA3005 843 -------------EVLL--LEDQNSKFIkEKKLMEDRIAECSSQLAEEEe 877 sla.aRkdlDeaTLarvDLEnkv...EsLqEElaFLKknHeEEvkeLqaq ++ k + + +DLE +++++E +El+ K+ + E +Lq q mKIAA3005 878 KAKnLAKIRNKQEVMISDLEERLkkeEKTRQELEKAKRKLDGETTDLQDQ 927 iqdtgqvnVEmDaarqqEwklDLtkaLrEiRaQY.....EeiAeknrqea i++ ++ +D+ k+ Ltk E++ ++++E + + n mKIAA3005 928 IAEL---QAQVDEL-----KVQLTKKEEELQGALargddETLHKNNALKV 969 EewYksKleeLqtaaarngealrsaKeEitElRRqiQsLeiELqslksqn +++++eLq+ ++ + a+ +l +++L EL++ + + mKIAA3005 970 ARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTT 1019 asLErqlaElEeryeaelaqyqalisqlEeeLqqlreEMarqLrEYQeLL a+ + ++ E+ ++ + +++ + E+++q++r+ a L E+ e L mKIAA3005 1020 AAQQELRTKREQEVAELKKALEDETKNHEAQIQDMRQRHATALEELSEQL 1069 dVKlaLDiEIATYRKLLEGEEsR<-* E + mKIAA3005 1070 -------------------EQAK 1073 Apolipoprotein: domain 1 of 1, from 939 to 1175: score -106.6, E = 0.85 *->KalvlaLalllLtGcqArsfwQadePEvteqaWqqsqwdqvkdrfwv K+ l+ L G Ar + k+ + mKIAA3005 939 KVQ-LTKKEEELQGALAR----------------GDDETLHKNNALK 968 YlrqVkdssdqaveqLessqvtqeLnllLednldelksyaeeLqeqLgPv r+++ + + +e +es + + ++ ++ +L+e+L mKIAA3005 969 VARELQAQIAELQEDFESEKA----------SRNKAEKQKRDLSEELEAL 1008 aqefqarLsKetqalraelgkDlEdvrnrlaPyrdEvqamlgqn...... +e+ ++L +t a+++ ++r + ++ +E+++ l++++++++ mKIAA3005 1009 KTELEDTL--DTTAAQQ-------ELRTKREQEVAELKKALEDEtknhea 1049 .leeyRqrLePlareLrkrlrrdaeeLqkrLaPyaeelReraernVdalr ++++ Rqr ++ ++eL ++l ++a+ +++ L+ +++l + ++ + +++ mKIAA3005 1050 qIQDMRQRHATALEELSEQL-EQAKRFKANLEKNKQGLETDNKELACEVK 1098 erLgPyvEqlRqkaAtlltqrleeLrEraqpyaeEykeqleeqlselRek + q+++ e r ++ ++++E++++++e +++lR mKIAA3005 1099 -----VLQQVKAE--------SEHKRKKLDAQVQELHAKVSE-GDRLRVE 1134 lapvredlqevltpv...lEqa.Qlklqaeafqeelkkkle<-* la+ + lq l v++ lE+a+ ++++ ++ l ++l+ mKIAA3005 1135 LAEKANKLQNELDNVstlLEEAeKKGIKFAKDAAGLESQLQ 1175 Myosin_tail_1: domain 1 of 1, from 930 to 1787: score 778.3, E = 3e-230 *->dlerqkreleeqlkrkeselsqlslklEdEqalvaqLqkkikeleaR +l q++el ql +ke+el++ ++ +dE + + k +el+a+ mKIAA3005 930 ELQAQVDELKVQLTKKEEELQGALARGDDETLHKNNALKVARELQAQ 976 IeELeEeLEaERaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEln I+EL+E+ E+E+a+R+KaEkq++DLs+ELE+L+ +Le+ ++TaaQ+El+ mKIAA3005 977 IAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELR 1026 kKREaELaKLRrdLEEanlqhEealatLRKKHqdainElsdQieqLqKqK KRE+E a L++ LE+++++hE+++ ++R +H++a++Els+Q+eq+++ K mKIAA3005 1027 TKREQEVAELKKALEDETKNHEAQIQDMRQRHATALEELSEQLEQAKRFK 1076 akaEKeKsqlqaEvddlaaqldqiaKaKlnaEKkakqlEsqlsElqvKld a +EK K+ l++++ +la ++ + K+++E k+k+l++q +El +K+ mKIAA3005 1077 ANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVS 1126 ElqRqlnDltsqKsRLqsENsdLtrqleEaEaqvsqlsklKsqlesQLEe E R + +l+++ +Lq+E+ + leEaE + + k ++ lesQL + mKIAA3005 1127 EGDRLRVELAEKANKLQNELDNVSTLLEEAEKKGIKFAKDAAGLESQLQD 1176 AkRslEEEsReRanLqaqlrnlehDlDslrEqlEEEsEAKaeleRqLsKa ++++l EE+R+++nL++ +r+le+++ sl+Eq EEE EA+ +le+q+ mKIAA3005 1177 TQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQEEEEEARKNLEKQVLAL 1226 naeiqqwrsKfEsEgalraEElEElKkKlnqkisElEeaaEaanaKcssL +++++ ++K + ++ E lEE+KkKl+++ ++l +++E+ + ++L mKIAA3005 1227 QSQLADTKKKVDDDLGT-IESLEEAKKKLLKDVEALSQRLEEKVLAYDKL 1275 EKtKsRLqsElEDlqievEranaaaseLEKKqknFDKilaEwKkkvdelq EKtK+RLq+El+Dl+++++++++ +s+LEKKqk+FD++laE+K ++ + mKIAA3005 1276 EKTKNRLQQELDDLTVDLDHQRQIVSNLEKKQKKFDQLLAEEKGISARYA 1325 aEletAqreaRnlstElfrlKneleElkDqvEaLrRENKnLqdEikDLtd E++ A+ eaR+++t++++l ++leE+++ +E ++R NK+L + DL + mKIAA3005 1326 EERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMS 1375 qLgEgGRnvHELEKarRrLEaEkdELqaALeEAEaALeqeEsKvlRaqvE ++++ G+nvHELEK +R+LE + +E ++LeE+E+ L+++E+++lR++v+ mKIAA3005 1376 SKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRLEVN 1425 lsqiRsEiERRLaEKEEEfEntRKnhqraiesLqasLaEaEaKgKaEalR ++++++++ER+L+ ++E E++++ + +++++L+a+L E E+K++a a++ mKIAA3005 1426 MQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAEL-EDERKQRALAVA 1474 lKKKLEgdInELEiaLDhaNkanaeaqKnvKkyqqqvkeLQtqvEeeQRa +KKK+E+d+++LE + ++aNka+ e K+++k+q+q k+ Q+ +Ee+++ mKIAA3005 1475 SKKKMEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEARAS 1524 redareqlavaERRataLqaElEELrvaLeqaeRaRKqAEtElaEaserv r+++ +q++++E++++ L+aE+ +L + L+++eRaR++AE+E++E+++++ mKIAA3005 1525 RDEIFAQSKESEKKLKSLEAEILQLQEELASSERARRHAEQERDELADEI 1574 neLtaqnssLiaqKRKLEgelaalqsDLDEavnElkaAeERakKAqaDaa ++ ++ s+L ++KR+LE+++a+l+++L+E++++ + +R +K ++ mKIAA3005 1575 ANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNDRFRKTTLQVD 1624 rLaeELrqEQehsqklErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIq L +EL++E++ qk ++ R qLE+q+KeL+++L+E+E a+ + K++I+ mKIAA3005 1625 TLNTELAAERSAAQKSDNARQQLERQNKELKAKLQELEGAVKSKFKATIS 1674 KLEaRVReLEaELdgEqRRhaetqKnlRKaeRrvKELqfQvEEDkKnler LEa++ LE++L+ E +++a ++K R++e+++KE+ +QvE+++++ ++ mKIAA3005 1675 ALEAKIGQLEEQLEQEAKERAAANKLVRRTEKKLKEIFMQVEDERRHADQ 1724 lQDLvDKLqaKiKtyKRQlEEaEEiaqinlsKyRkaQreLEdAEERADqA +++++K +a++K++KRQlEEaEE+a + + Rk+QreL+dA+E ++ + mKIAA3005 1725 YKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGL 1774 EsslnklRqreaKsRr<-* +++++ l+ Rr mKIAA3005 1775 SREVSTLK---NRLRR 1787 //