hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh10203/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2037  ( 793 res)   msh10203

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CXC      Tesmin/TSO1-like CXC domain                    163.0      5e-45   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CXC        1/2     564   604 ..     1    42 []    81.1  2.2e-20
CXC        2/2     638   679 ..     1    42 []    90.2  4.2e-23

Alignments of top-scoring domains:
CXC: domain 1 of 2, from 564 to 604: score 81.1, E = 2.2e-20
                   *->rhkKgCnCKKSkCLKlYCECFaagvfCsdnCkCidCkNneey<-*
                      r +K+CnC+KS CLKlYC+CFa+g+fC++ C+C++C+Nn+e+   
   mKIAA2037   564    RPRKPCNCTKSLCLKLYCDCFANGEFCNN-CNCTNCYNNLEH    604  

CXC: domain 2 of 2, from 638 to 679: score 90.2, E = 4.2e-23
                   *->rhkKgCnCKKSkCLKlYCECFaagvfCsdnCkCidCkNneey<-*
                      rh+KgCnCK+S+CLK+YCEC++a+++Cs++CkCi+CkN+ee+   
   mKIAA2037   638    RHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEES    679  

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