hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/meh/meh02376/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA2034 ( 1729 res) meh02376 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Myosin_head Myosin head (motor domain) 670.9 6.5e-198 1 Myosin_tail_1 Myosin tail 570.4 1.1e-167 1 IQ IQ calmodulin-binding motif 25.7 0.0011 1 Filament Intermediate filament protein -163.3 0.045 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Myosin_head 1/1 1 521 [. 1 795 [] 670.9 6.5e-198 IQ 1/1 537 557 .. 1 21 [] 25.7 0.0011 Filament 1/1 749 1051 .. 1 359 [] -163.3 0.045 Myosin_tail_1 1/1 823 1680 .. 1 863 [] 570.4 1.1e-167 Alignments of top-scoring domains: Myosin_head: domain 1 of 1, from 1 to 521: score 670.9, E = 6.5e-198 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp mKIAA2034 - ----------------------------------------------- - iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA mKIAA2034 - -------------------------------------------------- - GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqiLqsNPiLEA mKIAA2034 - -------------------------------------------------- - FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy I+Fd +G i vG++IetYLLEKSR ++ mKIAA2034 1 --------------------INFDIAGYI----VGANIETYLLEKSRAIR 26 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+++E +FHIFYQLL ga +q+ k++L+L+ + Y++L +++ + mKIAA2034 27 QAKDECSFHIFYQLLGGAGEQL-KADLLLE---PCSHYRFLTNGP----S 68 ytvyrrDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNie +++ e F++t+++l+++G+ ee+ ++r+++A+L+ GNi mKIAA2034 69 SSP------GQERELFQETLESLRVLGLLPEEITAMLRTVSAVLQFGNIV 112 GFkqdqatTGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaLlsrri +k+++ +++qA ++d+++ +++ + LLG++++++ +aLl++ri mKIAA2034 113 -LKKER----NTDQA---TMPDNTA-AQKLCRLLGLGVTDFSRALLTPRI 153 ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsa k+G r++v+k+q++eqA +a +ALAKa Y+RLF W+V + N+aL+ mKIAA2034 154 KVG-----RDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDR 198 keQasdSrGGqaaegdDTVSITVVdlPraaldkranfIGvLDIyGFEIFa + + a+f G+LDI+GFEIF mKIAA2034 199 SP---R--------------------------QGASFLGILDIAGFEIF- 218 ekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnq + NSFEQLcINY+NEKLQQ+FNh+mF+lEQEEY+rEgI+Wtf d+glD+q mKIAA2034 219 QLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQ 268 acidLIEkKmkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlth +cidLIE + +PpG+l+lLDEeC+fPkatD++F++K+ q + hp + mKIAA2034 269 PCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQ-GSHP---K 314 FaqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlis F q+p r+ ++++ F++ HYAG+V+Y a+ +l+KN+DpL+d++ + mKIAA2034 315 F-QRP-RN-----LRDQADFSVLHYAGKVDYKASEWLMKNMDPLNDNVAA 357 llksSsdvpllaeLFpeeelseaAnrrnkapdfeadfdeeeaaaksaklg ll +S+d +l ae+++++e + + s+ ++ mKIAA2034 358 LLHQSTD-RLTAEIWKDVE------------------GIVGLEQVSSLGD 388 sgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNek + g++ + ++f +Tvg ++kesl Lm+tLs+t nP fvRCI PN++ mKIAA2034 389 GPPGGRPRRGMF-RTVGQLYKESLSRLMATLSNT---NPSFVRCIVPNHE 434 KkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLap K+ag+++++lVl+Qlrc+GvLE giRi+r+GFPnRi+f+eF+qRY++L+p mKIAA2034 435 KRAGKLEPRLVLDQLRCNGVLE-GIRICRQGFPNRILFQEFRQRYEILTP 483 ktwpsgfrpkwvgdakkgceliLqslrqtpgnldkeeyrfGkTKiFfR<- +++p+gf +d+k++ce+++q+l +ld+++yr+G++KiFfR mKIAA2034 484 NAIPKGF-----MDGKQACEKMIQAL-----ELDPNLYRVGQSKIFFR 521 * mKIAA2034 - - IQ: domain 1 of 1, from 537 to 557: score 25.7, E = 0.0011 *->rraaikIQaawRGylaRkryk<-* ++ ++ +Qaa RGylaR++++ mKIAA2034 537 TDIIVSFQAAARGYLARRAFQ 557 Filament: domain 1 of 1, from 749 to 1051: score -163.3, E = 0.045 *->nEKeqmQnLNDRLAsYIdKVRfLEqqNkeLevkieelrqkqsrggpa +E+ + L RLA + ++ +e ++k mKIAA2034 749 KER---RLLEERLAEF--------------SSQAAEEEEKVK----- 773 svsrlyslYeteieeLRrqidqltner.......arlqlEidnlrealed s+ +l+ +Ye++i ++ + + ++ r++ ++ + rl E + l+e + mKIAA2034 774 SLNKLRLKYEATISDMEDRLKKEEKGRqeleklkRRLDGESSELQEQMVE 823 frkKyedKeDLaaQnqlkdlEialntkeaeLaTaLeRqeaE..ndlvgLR +++ e+ l + l +ke eL aL R+e E+++ + L mKIAA2034 824 QKQRAEE------------LLAQLGRKEDELQAALLRAEEEggARAQLL- 860 aQiAklE.sla.aRkdlDeaTLarvDLEnkvEsLqEElaFLKknHeEEvk ++ + +la+a dl+++ ar +E++ L EEl+ L+ e + mKIAA2034 861 KSLREAQaGLAeAQEDLEAERVARAKAEKQRRDLGEELEALRGELEDTLD 910 eLqaqiqdtgqvnVEmDaarqqEwklDLtkaLrEiRaQYEeiAeknrqea + aq + + + ++ + +L kaL E + +E+ ++ rq mKIAA2034 911 STNAQQELR-----SKREQE----VTELKKALEEESRAHEVSMQELRQ-- 949 EewYksKleeLqtaaarngealrsaKeEitElRRqiQsLeiELqslksqn + +++ + a + e++r+ K ++R sLe+E+ +lk+ mKIAA2034 950 ------RHSQALVEMAEQLEQARRGKGVWEKTRL---SLEAEVSELKAEL 990 asLErqlaElEe...ryeaelaqyqalisqlEeeLqqlreEMarqLrEYQ +sL+ +++E E++++r+e +l++ q s+ E++ ++ e ++r +E++ mKIAA2034 991 SSLQTSRQEGEQkrrRLESQLQEVQGRSSDSERARSEAAEKLQRAQAELE 1040 eLLdVKlaLDiEIATYRKLLEGEEsR<-* +V +aL E + mKIAA2034 1041 ---SVSTAL------------SEAES 1051 Myosin_tail_1: domain 1 of 1, from 823 to 1680: score 570.4, E = 1.1e-167 *->dlerqkreleeqlkrkeselsqlslklEdEqalvaqLqkkikeleaR + ++el +ql rke el++ l++E+E ++aqL k+++e +a mKIAA2034 823 EQKQRAEELLAQLGRKEDELQAALLRAEEEGGARAQLLKSLREAQAG 869 IeELeEeLEaERaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEln ++E++E+LEaER ARaKaEkqR+DL +ELE+L +Le+ ++T aQ+El+ mKIAA2034 870 LAEAQEDLEAERVARAKAEKQRRDLGEELEALRGELEDTLDSTNAQQELR 919 kKREaELaKLRrdLEEanlqhEealatLRKKHqdainElsdQieqLqKqK +KRE+E + L++ LEE+ +hE + +LR +H++a+ E+++Q+eq+++ K mKIAA2034 920 SKREQEVTELKKALEEESRAHEVSMQELRQRHSQALVEMAEQLEQARRGK 969 akaEKeKsqlqaEvddlaaqldqiaKaKlnaEKkakqlEsqlsElqvKld ++ EK + +l+aEv +l a+l+++ ++++ E k+++lEsql+E+q + mKIAA2034 970 GVWEKTRLSLEAEVSELKAELSSLQTSRQEGEQKRRRLESQLQEVQGRSS 1019 ElqRqlnDltsqKsRLqsENsdLtrqleEaEaqvsqlsklKsqlesQLEe + +R++++ +++ +R q+E+++ +l+EaE+++ l k s+ esQL + mKIAA2034 1020 DSERARSEAAEKLQRAQAELESVSTALSEAESKAIRLGKELSSAESQLHD 1069 AkRslEEEsReRanLqaqlrnlehDlDslrEqlEEEsEAKaeleRqLsKa ++++l EE+R++++L + +r le + + lrEq+EEE+ A++ + R+L+ mKIAA2034 1070 TQELLQEETRAKLALGSRVRALEAEAAGLREQMEEEVVARERAGRELQST 1119 naeiqqwrsKfEsEgalraEElEElKkKlnqkisElEeaaEaanaKcssL +a++ +wr + E+E+a E EE++++ + + + l +++ + ++ +L mKIAA2034 1120 QAQLSEWRRRQEEEAAV-LEAGEEARRRAAREAETLTQRLAEKTEAVERL 1168 EKtKsRLqsElEDlqievEranaaaseLEKKqknFDKilaEwKkkvdelq E+++ RLq+El+D+++++ + + s LEKKq++FD++laE+K+ v + mKIAA2034 1169 ERARRRLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLAEEKAAVLRAV 1218 aEletAqreaRnlstElfrlKneleElkDqvEaLrRENKnLqdEikDLtd +e + e R+ ++ +++l ++leE ++ E L+R N+ L E+ L + mKIAA2034 1219 EDRERIEAEGREREARALSLTRALEEEQEAREELERQNRALRAELEALLS 1268 qLgEgGRnvHELEKarRrLEaEkdELqaALeEAEaALeqeEsKvlRaqvE ++++ G+nvHELE ar++ E + L ++ E+E+ L ++E+++lR++v mKIAA2034 1269 SKDDVGKNVHELERARKAAEQAASDLRTQVTELEDELTAAEDAKLRLEVT 1318 lsqiRsEiERRLaEKEEEfEntRKnhqraiesLqasLaEaEaKgKaEalR +++++++ ER+L+ ++ E++R+++ +++++ +++ ++E+K++a a++ mKIAA2034 1319 VQALKAQHERDLQGRDDAGEERRRQLAKQLRDAEVER-DEERKQRALAMA 1367 lKKKLEgdInELEiaLDhaNkanaeaqKnvKkyqqqvkeLQtqvEeeQRa KKLE ++ EL + +a ++++ea K++Kk q q keL + vEe++ mKIAA2034 1368 ARKKLELELEELKAQTSAAGQGKEEAVKQLKKMQVQMKELWREVEETRSS 1417 redareqlavaERRataLqaElEELrvaLeqaeRaRKqAEtElaEaserv r++ +++ E++++ L+aE+ +L + L++++RaR+qA ++++E +e+v mKIAA2034 1418 RDEMFTLSRENEKKLKGLEAEVLRLQEELAASDRARRQAQQDRDEMAEEV 1467 neLtaqnssLiaqKRKLEgelaalqsDLDEavnElkaAeERakKAqaDaa ++ + + ++ ++KR+LEg+l++l+++L+E++n+++ + ++K+ +++ mKIAA2034 1468 ASGNLSKAATLEEKRQLEGRLSQLEEELEEEQNNSELLKDHYRKLVLQVE 1517 rLaeELrqEQehsqklErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIq L++EL +E++ s k+E++R qLE+q+ eL +RL E a A+++ K I+ mKIAA2034 1518 SLTTELSAERSFSAKAESGRQQLERQIQELRARLGEEDAGARARQKMLIA 1567 KLEaRVReLEaELdgEqRRhaetqKnlRKaeRrvKELqfQvEEDkKnler LE++ + E++L+ E+R++ ++K R+ae+r+KE+ Qv+E+++ ++ mKIAA2034 1568 ALESKLAQAEEQLEQESRERILSGKLVRRAEKRLKEVVLQVDEERRVADQ 1617 lQDLvDKLqaKiKtyKRQlEEaEEiaqinlsKyRkaQreLEdAEERADqA +D+++K++ ++K++KRQlEEaEE+a + + R++QreLEd +E+A+ + mKIAA2034 1618 VRDQLEKSNLRLKQLKRQLEEAEEEASRAQAGRRRLQRELEDVTESAESM 1667 EsslnklRqreaKsRr<-* +++++ lR Rr mKIAA2034 1668 NREVTTLR---NRLRR 1680 //