hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/meh/meh00056/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2029  ( 1233 res)   meh00056

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP1     Thrombospondin type 1 repeats                  135.3    6.6e-36   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP1       1/6     598   650 ..     1    66 []    63.3  3.1e-14
TSP1       2/6     883   937 ..     1    66 []     2.6      5.6
TSP1       3/6     939   996 ..     1    66 []    25.0     0.01
TSP1       4/6     998  1057 ..     1    66 []    26.7   0.0032
TSP1       5/6    1063  1124 ..     1    66 []    20.8    0.051
TSP1       6/6    1138  1190 ..     1    66 []    34.3  1.7e-05

Alignments of top-scoring domains:
TSP1: domain 1 of 6, from 598 to 650: score 63.3, E = 3.1e-14
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ws+Ws+WSpCS +tCGgG     + +R R     c +p p+    gg
   mKIAA2029   598    WSDWSPWSPCS-RTCGGG-----ISHRDR----LCTNPRPS---HGG 631  

                   epCs....EtrpCntqpnLqpCp<-*
                   + C+++++  + Cn q     Cp   
   mKIAA2029   632 KFCQgstrTLKLCNSQ----RCP    650  

TSP1: domain 2 of 6, from 883 to 937: score 2.6, E = 5.6
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w      S+CS v+CGgG         +     +c +  +    ++ 
   mKIAA2029   883    WAIVR--SECS-VSCGGG-----KMNSKA----GCYRDLKV--PVNA 915  

                   epCs.......EtrpCntqpnLqpCp<-*
                   + C +++++ +   pC ++    pCp   
   mKIAA2029   916 SFCNpktrpvtGLVPCKVS----PCP    937  

TSP1: domain 3 of 6, from 939 to 996: score 25.0, E = 0.01
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       ++ + WS CS +tCGgG     +++R  +    c + +       +
   mKIAA2029   939    SWSVGNWSVCS-RTCGGG-----TQSRPVR----CTRRAH----YRD 971  

                   epCs..........EtrpCntqpnLqpCp<-*
                   e+ + +  ++++++  ++Cn q     Cp   
   mKIAA2029   972 ESIPaslcpqpeppIHQACNSQ----SCP    996  

TSP1: domain 4 of 6, from 998 to 1057: score 26.7, E = 0.0032
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +++++W +CS +tCG+G     +r+Rt     +c+s +p+      
   mKIAA2029   998    AWSTGPWAECS-RTCGKG-----WRKRTV----ACKSTNPS---ARA 1031 

                   epCs...........EtrpCntqpnLqpCp<-*
                   +   ++  +++++++  ++C +      C+   
   mKIAA2029  1032 QLLHdtactsepkprTHEICLLK----RCH    1057 

TSP1: domain 5 of 6, from 1063 to 1124: score 20.8, E = 0.051
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +  s WS+CS vtC gG     +++R+ +    c     +     g
   mKIAA2029  1063    QWLVSAWSQCS-VTCQGG-----TQQRVLR----CAEKYIS-----G 1094 

                   epCs...............EtrpCntqpnLqpCp<-*
                   ++ +  +++  + ++++ +  r+C +     pCp   
   mKIAA2029  1095 KYRElaskkclhlpkpdleLERACGLI----PCP    1124 

TSP1: domain 6 of 6, from 1138 to 1190: score 34.3, E = 1.7e-05
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +  s+WS+C+ ++CGgG     v++Rt +    c +  +p      
   mKIAA2029  1138    SWFASPWSQCT-ASCGGG-----VQRRTVQ----CLLRGQP-----A 1169 

                   epCs......EtrpCntqpnLqpCp<-*
                   ++C  +++++ + +Cnt+     Cp   
   mKIAA2029  1170 SDCFlhekpeTSSACNTH----FCP    1190 

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