hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/meh/meh00056/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA2029 ( 1233 res) meh00056 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ADAM_spacer1 ADAM-TS Spacer 1 168.2 1.4e-46 1 Reprolysin Reprolysin (M12B) family zinc metallo 84.6 2.1e-21 1 TSP_1 Thrombospondin type 1 domain 72.4 9.5e-18 5 Pep_M12B_propep Reprolysin family propeptide 65.8 8.9e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pep_M12B_propep 1/1 120 244 .. 1 119 [] 65.8 8.9e-16 Reprolysin 1/1 301 504 .. 1 203 [] 84.6 2.1e-21 TSP_1 1/5 599 649 .. 1 55 [] 59.2 8.7e-14 ADAM_spacer1 1/1 755 867 .. 1 128 [] 168.2 1.4e-46 TSP_1 2/5 938 995 .. 1 55 [] 2.8 0.19 TSP_1 3/5 999 1056 .. 1 55 [] 16.5 0.0043 TSP_1 4/5 1064 1110 .. 1 55 [] 14.9 0.0068 TSP_1 5/5 1137 1189 .. 1 55 [] 8.5 0.039 Alignments of top-scoring domains: Pep_M12B_propep: domain 1 of 1, from 120 to 244: score 65.8, E = 8.9e-16 *->hLeknrsllapdftvttYdedGtlvteepliqddHCyYqGyVeGypn +L+ l ap+f+v t ++ Gt ++ ++ ++C+YqG ++ n mKIAA2029 120 DLKAASNLMAPGFMVQTLGKGGTKSVQMFPPE-ENCFYQGSLRSQGN 165 SaVslSTCsGgLRGilqlenlsYgIEPles...........sdgfeHiiY S+V+lSTC+G L G++++ ++ Y+++Pl+ + +++ +++ ++d+ H++Y mKIAA2029 166 SSVALSTCQG-LLGMIRTKDTDYFLKPLPPhltsklnrsaqGDSPSHVLY 214 qienlktepspcgecgslstsadssygirsass<-* + te ++ +e+ +l+ +++ ++ +++ ++ mKIAA2029 215 KR---STERQAPRENEVLMITRKRDLARPHLHH 244 Reprolysin: domain 1 of 1, from 301 to 504: score 84.6, E = 2.1e-21 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrp.....q +E +VvD +m++ +g ++ i+++V+ i N+v +++++ ++ mKIAA2029 301 --VETLVVVDRKMMQSHG--HENITTYVLTILNMVSALFKDgtiggN 343 LNIrVv.LvgLEIWsdgDk.InvqsdandTLhsFgeWRetdLlkr..ksH +NI +v+L+ LE d++++ ++ +a+ TL sF +W ++ L+ +++ +H mKIAA2029 344 INIVIVgLILLE---DEQPgLAISHHADHTLTSFCQW-QSGLMGKdgTRH 389 DnAqLLtgidf......dgntiGaAyvggmCspkrSvGVvqdhspivllv D+A+LLtg d + ++++ t+G A+++gmCs+ rS+ V++d l++ mKIAA2029 390 DHAILLTGLDIcswknePCDTLGFAPISGMCSKYRSCTVNEDS---GLGL 436 AvtMAHELGHNLGmtHDdkntdgCtCegggsCIMnpv.assspskKkFSn A t+AHE GHN+Gm HD++ + C+ +++ IM+p a++ S+ mKIAA2029 437 AFTIAHESGHNFGMVHDGEGN-MCKK--SEGNIMSPTlAGRNGVF-SWSS 482 CSkddyqkFltkqkpqCLlNkP<-* CS+ +++kFl+ + CL ++P mKIAA2029 483 CSRQYLHKFLSTAQAICLADQP 504 TSP_1: domain 1 of 5, from 599 to 649: score 59.2, E = 8.7e-14 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+Ws+WSpCS TCG+Gi+ R R+c +p P +gg++C g ++ + mKIAA2029 599 SDWSPWSPCSRTCGGGISHRDRLCTNPRPS-HGGKFCQGSTRT--LK 642 aCdmmdkC<-* C + + C mKIAA2029 643 LC-NSQRC 649 ADAM_spacer1: domain 1 of 1, from 755 to 867: score 168.2, E = 1.4e-46 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA t++G ++k++ ++ Y+++vtIP GAr+I I E + S+ +y+ mKIAA2029 755 VTHRGLYSKHHSTNQYYHMVTIPSGARSIHIYETNIST-----SYIS 796 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt ++ns + y+LNG+w +++pgr +++ G++f+Y r s +pE Lt mKIAA2029 797 VRNSL-KR-YYLNGHWSVDWPGR-YKFSGATFNYKR-SYK----EPENLT 838 atGPtnepLivqvLfqggapnpgikYeYtiP<-* ++GPtne+Liv++Lfq ++npg+++e+++P mKIAA2029 839 SPGPTNETLIVELLFQ--GRNPGVAWEFSLP 867 TSP_1: domain 2 of 5, from 938 to 995: score 2.8, E = 0.19 *->spWs..eWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.. s Ws + WS CS TCG+G+++R +c + ++ ++ ++ + mKIAA2029 938 SSWSvgNWSVCSRTCGGGTQSRPVRCTRR-------AHYRDESIPas 977 ........leteaCdmmdkC<-* +++++++ +aC + + C mKIAA2029 978 lcpqpeppIH-QAC-NSQSC 995 TSP_1: domain 3 of 5, from 999 to 1056: score 16.5, E = 0.0043 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... +++W +CS TCGkG r R+ c+s+ P + +++ d+ ++++ mKIAA2029 999 WSTGPWAECSRTCGKGWRKRTVACKSTNP--SARAQLLHDTACtsep 1043 ..leteaCdmmdkC<-* ++ e+C + C mKIAA2029 1044 kpRTHEIC-LLKRC 1056 TSP_1: domain 4 of 5, from 1064 to 1110: score 14.9, E = 0.0068 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s WS+CSVTC +G+++R+ +c+ + g+++el ++ mKIAA2029 1064 WLVSAWSQCSVTCQGGTQQRVLRCA--------EKYISGKYRELASK 1102 aCdmmdkC<-* +C + +k mKIAA2029 1103 KCLHLPKP 1110 TSP_1: domain 5 of 5, from 1137 to 1189: score 8.5, E = 0.039 *->spW..seWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqele + W s+WS+C+ +CG+G++ R+ c + + ++C + + mKIAA2029 1137 GSWfaSPWSQCTASCGGGVQRRTVQCLLRGQP---ASDCFLHEKPET 1180 teaCdmmdkC<-* + aC + + C mKIAA2029 1181 SSAC-NTHFC 1189 //