hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mib/mib04094/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2028  ( 1392 res)   mib04094

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MyTH4    MyTH4 domain                                    92.5    8.5e-24   1
PH       PH domain                                       74.6    2.1e-18   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/2     597   697 ..     1    92 []    55.8  9.2e-13
PH         2/2     712   819 ..     1    92 []    20.1    0.051
MyTH4      1/1     897  1010 ..     1   118 []    92.5  8.5e-24

Alignments of top-scoring domains:
PH: domain 1 of 2, from 597 to 697: score 55.8, E = 9.2e-13
                   *->vikeGwLlkkg........gkkswkkRyfvLfndvLlyykdkk...k
                         + +L   ++++++ + + k+wk+R+fvL+++ Llyyk++++   
   mKIAA2028   597    KLLKTCLASCDngknemsvRVKTWKRRWFVLKGGELLYYKSPSdviR 643  

                   kpkgsipLsgi.qvekvpdnkrkncFeirt.dretlllqaeseeerkeWv
                   kp+g i Ls + ++ + ++   k + ++ t+ + t++l a+s+  ++eW+
   mKIAA2028   644 KPQGHIELSAScSILRGDN---KQTVQLATeKH-TYYLTADSPNILEEWI 689  

                   kaiqsair<-*
                   k +qs++r   
   mKIAA2028   690 KVLQSVLR    697  

PH: domain 2 of 2, from 712 to 819: score 20.1, E = 0.051
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk.kkpkgsipLsg
                      +  +G L+k    +  k+++++L ++vL+y+++  +k p g + L +
   mKIAA2028   712    PAVKGLLTKVK-HGYSKRVWCMLVGKVLYYFRNQEdKFPLGQLKLWE 757  

                   iqvekvpdn...............krkncFeirt.dretlllqaeseeer
                   ++ve+v+++ +++++ ++++     +++++ ++ +d+   +l   s  e+
   mKIAA2028   758 AKVEEVDRScdsdedyetrgcyllSTHYTIIVHPkDQGPTYLLIGSKHEK 807  

                   keWvkaiqsair<-*
                   + W+ ++  a+    
   mKIAA2028   808 EAWLYHLTVAVG    819  

MyTH4: domain 1 of 1, from 897 to 1010: score 92.5, E = 8.5e-24
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                      ++ i l+q+ l+ ++  peL +Ei CQ+iKQ++  + q   + l GW
   mKIAA2028   897    DYHISLAQSALQVCLTHPELQNEICCQLIKQTRRRQLQNQPGPLQGW 943  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqlsgpelegyaadcqerLk
                   +Ll lc+g+F+P   +l  L+   l+r+a+   s +e+ +ya++cq+  +
   mKIAA2028   944 QLLALCVGLFLPHHPFLWLLQ-LHLQRNAD---SRTEFGKYAIYCQRCVE 989  

                   ktqknGsRkypPsrlEieAik<-*
                   +tq nG R+  Psr Ei++++   
   mKIAA2028   990 RTQQNGDREARPSRMEILSTL    1010 

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