hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mic/mic13031/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA2025 ( 1136 res) mic13031 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RING Ring finger 33.3 3.2e-05 1 ZnF_C3H1 zinc finger 25.6 0.0071 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RING 1/1 20 59 .. 1 23 [] 33.3 3.2e-05 ZnF_C3H1 1/1 419 446 .. 1 31 [] 25.6 0.0071 Alignments of top-scoring domains: RING: domain 1 of 1, from 20 to 59: score 33.3, E = 3.2e-05 *->CpICle........pvvlpCgH.FCr.Ci.......CPlC<-* CpIC ++ +++ ++p+ l CgH+ C+ C+++ +++ CP+ mKIAA2025 20 CPICTQtfdetirkPISLGCGHtVCKmCLnklhrkaCPFD 59 ZnF_C3H1: domain 1 of 1, from 419 to 446: score 25.6, E = 0.0071 *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-* kykt C++ ++rG Cp+G++C faH+ mKIAA2025 419 KYKTYMCRDMKQRG---GCPRGASCTFAHSQ 446 //