hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic13031/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2025  ( 1136 res)   mic13031

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and simil    31.2    2.4e-05   1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           20.7     0.0073   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1      20    59 ..     1    50 []    20.7   0.0073
zf-CCCH    1/1     420   446 ..     1    27 []    31.2  2.4e-05

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 20 to 59: score 20.7, E = 0.0073
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+IC ++++e  +  p+ l CgH+     +C+ Cl +  +    + C
   mKIAA2025    20    CPICTQTFDETIRK-PISLGCGHT-----VCKMCLNKLHR----KAC 56   

                   plC<-*
                   p+    
   mKIAA2025    57 PFD    59   

zf-CCCH: domain 1 of 1, from 420 to 446: score 31.2, E = 2.4e-05
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      ykt  Cr+ ++ G C++G++C FaH++   
   mKIAA2025   420    YKTYMCRDMKQRGGCPRGASCTFAHSQ    446  

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