hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtg/mtg03092/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2023  ( 1687 res)   mtg03092

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d    71.9    8.1e-17   1
PHD      PHD zinc finger                                 33.0    4.1e-05   1
H15      Domain in histone families 1 and 5              32.6    5.4e-05   1
HELICc   helicase superfamily c-terminal domain          27.2     0.0022   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
H15        1/1     444   510 ..     1    70 []    32.6  5.4e-05
PHD        1/1     664   711 ..     1    39 []    33.0  4.1e-05
DEXDc      1/1     308   879 ..     1   219 []    71.9  8.1e-17
HELICc     1/1    1546  1626 ..     1    86 []    27.2   0.0022

Alignments of top-scoring domains:
H15: domain 1 of 1, from 444 to 510: score 32.6, E = 5.4e-05
                   *->pasHPpyseMIteAItaLKERkGSSlqAIkKYIeanhykvlpnnnkf
                      + + Pp+  MI+ A++ ++ +kG S  +I+KY+ +  +  + ++   
   mKIAA2023   444    KVHCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSI-FRYDVQR--N 487  

                   rklLklaLkklVasGkLvqvKGs<-*
                   r lLk+ Lk l   G  +q+KG    
   mKIAA2023   488 RGLLKRMLKCLIFEGLVKQIKGH    510  

PHD: domain 1 of 1, from 664 to 711: score 33.0, E = 4.1e-05
                   *->yCvCgk......g.llqCdkgCdrwyHv.Clgpple.epdg.wyCpr
                       C+Cg+ +  ++ + +qC  +C  w+H +C+++++++++ +++yCp+
   mKIAA2023   664    ECICGEfdqighKpRVQCL-KCHLWQHAkCVNYEEKnLKVKpFYCPH 709  

                   Ck<-*
                   C+   
   mKIAA2023   710 CL    711  

DEXDc: domain 1 of 1, from 308 to 879: score 71.9, E = 8.1e-17
                   *->gf.klrpyQkeaipwlleg............................
                      +++ lrpyQ+ea++w+l+ ++ ++ ++ +++ +   ++  ++++ + 
   mKIAA2023   308    LIpVLRPYQREAVNWMLQQeqfrsappadnslhflwreivtpdglkl 354  

                   ....................rdvilaapTGsGKTlafllpllellkkgkp
                     ++ ++   ++ ++ +++  ++ila+++G+GKT+  l  +l + +++ +
   mKIAA2023   355 yynpytgciirdfphagpqlLGGILADEMGLGKTVEVLALILTHTRQDVK 404  

                   las...............................................
                   ++  + ++++  +   +++ ++++ ++++ ++++ +++++ + ++++   
   mKIAA2023   405 QDAltlpegkvvnyfipthcprekvknreiqdteyepkekvhcpptrvmi 454  

                   ..................................................
                    +  ++ +++++ +  +  +  ++  + + +++++  ++  +    ++  
   mKIAA2023   455 ltavkemngkkgvsilsiykyvssifrydvqrnrgllkrmlkclifeglv 504  

                   ..................................................
                   ++ ++++ +++ + +++ +++  ++++++  +++++ +++ +++ +++ +
   mKIAA2023   505 kqikghgfsgtftlgknykedvfdktkkqavgsprkiekelrksvnkdad 554  

                   ..................................................
                   ++  ++++++++++     + ++++++ +++   ++++++++ + +++++
   mKIAA2023   555 seylpsntsdddepyyyyckagksrsklkkpalltkkgkgqsvhldsqgd 604  

                   ..................................................
                    +  +   +++ + ++++  ++++++++ ++  +++++  ++  ++++++
   mKIAA2023   605 apaagvcastdvhvsentcvsedkqtqeakdcaespnpaaeelaqsntss 654  

                   ..................................................
                   + ++++ + +   ++ ++ +++++ +  + +  ++ +  + ++++ + ++
   mKIAA2023   655 pcetsdyrfecicgefdqighkprvqclkchlwqhakcvnyeeknlkvkp 704  

                   ..........kkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevl
                      ++     ++     +L+++P  + ++Qw++e++++  s+        
   mKIAA2023   705 fycphclvamEPVSTRATLIISP-SSICHQWVDEINRHVRSSS------- 746  

                   kvvglygG.sktkekeqlrklksgkt....dilvtTpgrLldll.ngkg.
                    +v++y G +k         +++ ++  ++di++ T+++L+++l+  + +
   mKIAA2023   747 LRVLVYQGvKK-------HGFLQPHFlaeqDIVIITYDVLRSELnYVNIp 789  

                   ......................lsl.nldlvilDEaHrlldmgsggdhgf
                   +++++++++ +++++    +++l   ++ ++ lDEa+++           
   mKIAA2023   790 hsnsedgrrlrnqkrymaipspLVAvEWWRICLDEAQMVE--------CP 831  

                   gdqle.llkrlpknrqrlllSATppeienllklflnlpelfpnpvfisvg
                   + + +++ +rl + ++r++ S+Tp  +++ l++++       ++vf+ ++
   mKIAA2023   832 TVKAAeMAQRL-SGINRWCISGTP--VQRGLEDLFG------LVVFLGIE 872  

                   ftlepieqf<-*
                     +  ++++   
   mKIAA2023   873 --PYCVKHW    879  

HELICc: domain 1 of 1, from 1546 to 1626: score 27.2, E = 0.0022
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki..kvL
                      d++++ L+ +    +++++ +      +  +e l +F+ +   +  L
   mKIAA2023  1546    DIISKALTDN----NMEFTQISR---IKTFQENLSAFKYDPHinILL 1585 

                   vaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   +   +++ Gl+i ++++V   ++ ++pa ++Q+iGR++R+G   
   mKIAA2023  1586 LPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIG    1626 

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