hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mtg/mtg03092/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA2023 ( 1687 res) mtg03092 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SNF2_N SNF2 family N-terminal domain 42.9 4.2e-10 1 Linker_histone linker histone H1 and H5 family 40.0 5.4e-08 1 PHD PHD-finger 24.2 0.0015 1 Helicase_C Helicase conserved C-terminal domain 23.6 0.0018 1 TPR_2 Tetratricopeptide repeat 17.0 0.47 1 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 9.9 0.095 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Linker_histone 1/1 446 520 .. 1 78 [] 40.0 5.4e-08 PHD 1/1 664 713 .. 1 51 [] 24.2 0.0015 SNF2_N 1/1 315 991 .. 1 356 [] 42.9 4.2e-10 TPR_2 1/1 1028 1061 .. 1 34 [] 17.0 0.47 zf-C3HC4 1/1 1436 1482 .. 1 50 [] 9.9 0.095 Helicase_C 1/1 1541 1626 .. 1 76 [] 23.6 0.0018 Alignments of top-scoring domains: Linker_histone: domain 1 of 1, from 446 to 520: score 40.0, E = 5.4e-08 *->sHPpyseMIvaAIaaLKERkGSSvqAIkKYIeanhYkvdpaasnlns Pp++ MI++A + ++ +kG S I KY+++ ++ d + +++ mKIAA2023 446 HCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSI-FRYDVQ--RNRG 489 hlklaLKkgVasGkLvqvKGsGASGSFKLak<-* +lk++LK + G ++q+KG G SG F L+k mKIAA2023 490 LLKRMLKCLIFEGLVKQIKGHGFSGTFTLGK 520 PHD: domain 1 of 1, from 664 to 713: score 24.2, E = 0.0015 *->yCsvCgkpddd.aggdllqCDgCdrwfHlaClgppleeppegkWlCp C +Cg+ +d + +qC +C w+H++C++ ++++ + ++Cp mKIAA2023 664 EC-ICGE-FDQiGHKPRVQCLKCHLWQHAKCVNYEEKNLKVKPFYCP 708 eCtpk<-* +C ++ mKIAA2023 709 HCLVA 713 SNF2_N: domain 1 of 1, from 315 to 991: score 42.9, E = 4.2e-10 *->YQleGvnWLislyknlvk............................. YQ e+vnW+ +++ ++ ++ +++ + ++ ++++ + ++ mKIAA2023 315 YQREAVNWMLQQEQF--Rsappadnslhflwreivtpdglklyynpy 359 ........kendslglggILADEMGLGKTlQtIsllaylkelkpkte... ++ ++ lggILADEMGLGKT+++ +l+ + +++ k+ + mKIAA2023 360 tgciirdfPHAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDalt 409 .................................................. ++++ + +++ ++++ ++++ ++++ +++++ + ++++ + + mKIAA2023 410 lpegkvvnyfipthcprekvknreiqdteyepkekvhcpptrvmiltavk 459 .................................................. + +++++ + + + ++ + + +++++ ++ + ++ ++ ++ mKIAA2023 460 emngkkgvsilsiykyvssifrydvqrnrgllkrmlkclifeglvkqikg 509 .................................................. ++ +++ + +++ +++ ++++++ +++++ +++ +++ +++ +++ + mKIAA2023 510 hgfsgtftlgknykedvfdktkkqavgsprkiekelrksvnkdadseylp 559 .................................................. +++++++++ + ++++++ +++ ++++++++ + +++++ + + mKIAA2023 560 sntsdddepyyyyckagksrsklkkpalltkkgkgqsvhldsqgdapaag 609 .................................................. +++ + ++++ ++++++++ ++ +++++ ++ +++++++ +++ mKIAA2023 610 vcastdvhvsentcvsedkqtqeakdcaespnpaaeelaqsntsspcets 659 .................................................. + + + ++ ++ +++++ + + + ++ + + ++++ + ++ ++ mKIAA2023 660 dyrfecicgefdqighkprvqclkchlwqhakcvnyeeknlkvkpfycph 709 ......k.rigpfLvVcPlStldnWlnEfekwapddlnivvyygdgnsrd + +L++ P+S+ ++W+ E+ +++ ++ + v+++ g ++ mKIAA2023 710 clvamePvSTRATLIISPSSICHQWVDEINRHVR-SSSLRVLVYQGVKK- 757 qirkdellrnvlkdggrlkfdvlitsYeiirkNkLl.............. + +l+++++++ d++i++Y+++r+ L + ++++++++++ mKIAA2023 758 ----HGFLQPHFLAEQ----DIVIITYDVLRS-ELNyvniphsnsedgrr 798 ........kdkdeLkkleinwryvilDEGHHriKNedSklrkskalkklk +++++ + + L ++w ++ lDE+ ++ ++ k ++ l mKIAA2023 799 lrnqkrymAIPSPLVA--VEWWRICLDEA-QMVECPTVKA--AEMAQRLS 843 hannRLlLTGTPlQNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfn nR++++GTP Q L++l+ L+ Fl + + + + + mKIAA2023 844 -GINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVK-------HWWIRLLY 885 npiaeggdsavLadkteaLrreknveeglklinrLhkilkpflLRRlKkd p + + L+ + +++ R Kkd mKIAA2023 886 HPYCKKNP------------------------QHLYSFIAKIMWRSAKKD 911 veksLpppeKteyvlfcelsklQkelY..kkflkg............esk v ++++ p+ te + + +s ++ +Y++++ + ++ + ++ ++ mKIAA2023 912 VIDQIQIPPQTEEMHWLHFSPVERHFYhrQHEVCCqdaivklrkisdWAL 961 dvkaindserreggkeknegksrllnlimqLrKicNfHPyLf<-* ++ + ++ s++l +++Lr++c+ HP + mKIAA2023 962 KLSSLDRRT---V--------SSILYPLLRLRQACC-HPQAV 991 TPR_2: domain 1 of 1, from 1028 to 1061: score 17.0, E = 0.47 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + al+ l+ +++ +g+y+ A+e+y+++l+ +++ mKIAA2023 1028 VCALNGLAGIHIIKGEYALAAELYREVLRSSEEH 1061 zf-C3HC4: domain 1 of 1, from 1436 to 1482: score 9.9, E = 0.095 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss...... C+IC l +l CgH fC +C + +++ + +++ mKIAA2023 1436 CPICARQLGKQW----AVLTCGHC-----FCNECTSIIIEQysvgsh 1473 sgnttCplC<-* + + +C +C mKIAA2023 1474 RSSIKCAIC 1482 Helicase_C: domain 1 of 1, from 1541 to 1626: score 23.6, E = 0.0018 *->ll.epgikvarlhGglsqeeReeilekFrsgks.........kvLva + + ++i +l+ + + + ++ F+++ s + +++ + +L+ mKIAA2023 1541 WQdVLDIISKALTDNNMEFTQISRIKTFQENLSafkydphinILLLP 1587 TdvaarGlDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* ++ Gl+i ++++V ++ np+ ++Q+iGR++R+G mKIAA2023 1588 LHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIG 1626 //