hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh06352/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2021  ( 643 res)   mnh06352

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Pumilio  Pumilio-like repeats                            37.0    2.5e-06   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Pumilio    1/5     196   227 ..     1    39 []     0.0  4.7e+02
Pumilio    2/5     321   356 ..     1    39 []     6.0       78
Pumilio    3/5     358   394 ..     1    39 []    10.8       18
Pumilio    4/5     516   553 ..     1    39 []     9.0       32
Pumilio    5/5     554   589 ..     1    39 []    11.2       16

Alignments of top-scoring domains:
Pumilio: domain 1 of 5, from 196 to 227: score 0.0, E = 4.7e+02
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      e+ +++l ++ d +G++V+ +ll+++          +++   
   mKIAA2021   196    EVCDDFLFFCGDTHGSFVVRTLLQVLGGT-------LLE    227  

Pumilio: domain 2 of 5, from 321 to 356: score 6.0, E = 78
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      +    ll +  dq ++r+++++l ++ ++    ++++ +   
   mKIAA2021   321    ADGSPLLLFLRDQTSSRLLEQVLLVLEAE---RLQRLYK    356  

Pumilio: domain 3 of 5, from 358 to 394: score 10.8, E = 18
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                       ++g+l +L+ ++ +n+ +Q+ll+  + +e   + + ++   
   mKIAA2021   358    HFQGQLCSLAEHPIANFPLQRLLDAITSPE--LLSLVFE    394  

Pumilio: domain 4 of 5, from 516 to 553: score 9.0, E = 32
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      +  ++ll+L++ + G++V   +l   s+ +  q+ + ++   
   mKIAA2021   516    LTGPQLLTLAQSPAGSHVFDAILSSPSVTHK-QRRRVLK    553  

Pumilio: domain 5 of 5, from 554 to 589: score 11.2, E = 16
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ++kg+ + L++ ++G+rV+  ++  a       ++ei     
   mKIAA2021   554    TLKGQYVALACSRHGSRVLDAIWSGAALG---ARKEIAA    589  

//